Query= MSMg01no297_m15.b1 MSMg01no297_m15.b1 CHROMAT_FILE:
MSMg01no297_m15.b1 PHD_FILE: MSMg01no297_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:18 2005
(672 letters)
>mm_chr18_29761525_29762596
Length = 1072
Score = 1147 bits (593), Expect = 0.0
Identities = 650/669 (97%), Gaps = 2/669 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaaacaggaactcacgccaagaagattaaggcacacttcctcctggcttgctgc 63
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 1046 ggaattcaaacaggaactcaagccaagatgattaaggcacacttcctcctggcttgctgc 987
Query: 64 catgttcttgtgcacttacttatttttaatgcagcccagcactatcttcctagggacatt 123
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 986 catgttcttgtgcacttacttatttttaatgtagcccagcactatcttcctagggacatt 927
Query: 124 actacaaacagtgggctcggtctccatatatcataaaataataaggaagatgcccaagac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 actacaaacagtgggctcggtctccatatatcataaaataataaggaagatgcccaagac 867
Query: 184 tatgctgcacagagcttggagcctattttgattcatttcctatttgaaggccagaaagtt 243
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 866 tatgctgcacagagcttggagcctattttgatttatttcctatttgaaggccagaaagtt 807
Query: 244 ccaacatggtctatgactcactctagagctgagcgaaggagctgcggataaagaattcca 303
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 806 tcaacatggtctatgactcactctagagttgagcgaaggagctgcggatgaagaattcca 747
Query: 304 aagagagtttccagcttctattgtaatgctgactggagttctccttgtttgctgttatca 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aagagagtttccagcttctattgtaatgctgactggagttctccttgtttgctgttatct 687
Query: 364 gtagtgggagcttggagactttggatccttgtatctctctccagcctttagttggtcctc 423
||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct: 686 gtagtgggagcttggagactttggatccttgtatctctctccagcgtttattttctcctc 627
Query: 424 tttcattccatggggacctttttcacagaacccagctct-aaggtctcttactacatagc 482
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 626 tttcattccatggggacctctttcacagaacccagctcttaaggtctcttactacatagc 567
Query: 483 caaagaaagctaaagtttgttcatgatgtggtaatgaaagaacgggactgtgtgcttctt 542
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 566 caaagaaagctaaagtttgttcatgatgtggtaatgaaagaacgggtctgtgtgcttctt 507
Query: 543 ttgccagcttctcaactgcagatactctctcagtggtaccttanaatactaaaggtttta 602
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 506 ttgccagcttctcaactgcagatactctctcagtggtacctaa-aatactaaaggtttta 448
Query: 603 caagctgtcttgacccagtcaccttccctcctggtcctcagttgcacgtgtatgcccctc 662
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 447 caagctgtcttgacccagtcaccttccctcctggtcttcagttgcatgtgtatgcccctc 388
Query: 663 cttctggat 671
|||||||||
Sbjct: 387 cttctggat 379
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_m15.g1 MSMg01no297_m15.g1 CHROMAT_FILE:
MSMg01no297_m15.g1 PHD_FILE: MSMg01no297_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:18 2005
(665 letters)
>mm_chr18_29728091_29729155
Length = 1065
Score = 1278 bits (661), Expect = 0.0
Identities = 664/665 (99%)
Strand = Plus / Plus
Query: 1 ctaacatagagttggagatttcttttagggttttaagccaaagatataatacaataaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaacatagagttggagatttcttttagggttttaagccaaagatataatacaataaaaa 260
Query: 61 gaaatattcagtaagcagacaatagggctagttgtgacagtgacaaactctgggaactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatattcagtaagcagacaatagggctagttgtgacagtgacaaactctgggaactgg 320
Query: 121 cataactttttatgtgctcattggtgttctccattctatgcattctaaaacatttctaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataactttttatgtgctcattggtgttctccattctatgcattctaaaacatttctaaa 380
Query: 181 gtactccttaatgcaatgttttcatttcataccagcattaatagcagtgtaaatgttttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtactccttaatgcaatgttttcatttcataccagcattaatagcagtgtaaatgttttc 440
Query: 241 aaagacagacttagagatgctaacattttgtaaatggactccatgcacgggaggattatc 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 aaagacagacttagagatgctaacatcttgtaaatggactccatgcacgggaggattatc 500
Query: 301 gcttgcaacttgacctcaaatctagttaattaagcccctcaactctatctctacatattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttgcaacttgacctcaaatctagttaattaagcccctcaactctatctctacatattt 560
Query: 361 ttcagcattctgtcataacttctttctgctcaaacgtcatccctcccctcttctttaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcagcattctgtcataacttctttctgctcaaacgtcatccctcccctcttctttaggt 620
Query: 421 atgaatttcttattaaatattcaaattcatctttctttgagaagacatatttattgaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgaatttcttattaaatattcaaattcatctttctttgagaagacatatttattgaaat 680
Query: 481 ctctctctctttttgtcccaaatcattccttcacagtatcacaatgttttttgtttcttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctctctctttttgtcccaaatcattccttcacagtatcacaatgttttttgtttcttc 740
Query: 541 cagcctagggtaatgtgctatagatataggaaaaggtgaaatttactgtgtcctcaagac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagcctagggtaatgtgctatagatataggaaaaggtgaaatttactgtgtcctcaagac 800
Query: 601 aattatctggaaagaaaatcaaataaatattaagggatataagggaaaataaataactta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aattatctggaaagaaaatcaaataaatattaagggatataagggaaaataaataactta 860
Query: 661 ataag 665
|||||
Sbjct: 861 ataag 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
