Query= MSMg01no298_d01.b1 MSMg01no298_d01.b1 CHROMAT_FILE:
MSMg01no298_d01.b1 PHD_FILE: MSMg01no298_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:49 2005
(543 letters)
>mm_chr18_4096630_4097571
Length = 942
Score = 986 bits (510), Expect = 0.0
Identities = 533/541 (98%), Gaps = 1/541 (0%)
Strand = Plus / Minus
Query: 1 agcgcctaaaaatctcccccaaacaatagcaccgaagctgactactactagtgaggcgaa 60
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 740 agcgactaaaaatctcccccaaataatagcaccgaagctgactactactagtgaggcgaa 681
Query: 61 caggttttttccctaagacagtacacatgataattttaaaatcacattctgtttggtttg 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 caggttttttccctaagacagtacacatgataatttaaaaatcacattctgtttggtttg 621
Query: 121 ttgaaaaagagaaagtgttagtggagatggaggtggggcagaggctcagagtagaatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgaaaaagagaaagtgttagtggagatggaggtggggcagaggctcagagtagaatttc 561
Query: 181 aagatcacagctgcaaagctattcagttttggcagcaactttagcaacaaatatgtcttt 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagatctcagctgcaaagctattcagttttggcagcaactttagcaacaaatatgtcttt 501
Query: 241 gtaaacttattcttacattgcaacctgaaaataatgcacatgattttatcaaactgaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtaaacttattcttacattgcaacctgaaaataatgcacatgattttatcaaactgaggc 441
Query: 301 accaaggaagcaatgagcaggtcttggaaagcctaaataaaaatcaacaactctcacagt 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 440 accaaggaagcaatgagcaggtcttggaaagcctaaataaaaatcaacaagtctcacagt 381
Query: 361 cagaacagtcaatagcagcacagaaaccgaaggccactggtgcctcctgaccagcacgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 cagaacagtcaatagcagcacagaaaccgaaggccactggtgcctcctgaccagcacctg 321
Query: 421 tgggctgtgggcctgggctgttggttacccactgagactctttctagacctgactgaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgggctgtgggcctgggctgttggttacccactgagactctttctagacctgactgaaca 261
Query: 481 attggctgctgaatctcacagagaanaagagcttggtaagaatgtatcttcctttattca 540
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 260 attggctgctgaatctcacagagaaaaagagcttggtaagaatgtat-ttcctttattca 202
Query: 541 g 541
|
Sbjct: 201 g 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space: 496756
Effective search space used: 496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_d01.g1 MSMg01no298_d01.g1 CHROMAT_FILE:
MSMg01no298_d01.g1 PHD_FILE: MSMg01no298_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:49 2005
(554 letters)
>mm_chr18_3924476_3925429
Length = 954
Score = 1048 bits (542), Expect = 0.0
Identities = 551/554 (99%)
Strand = Plus / Plus
Query: 1 catggcatgagtaagggagttctgtaagatgtgtttgtctactctgtgactactttgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggcatgagtaagggagttctgtaagatgtgtttgtctactctgtgactactttgtct 260
Query: 61 ctgcagggaacaaaggatgaggcttaatgtcaacaagacccacctgaatagtttttctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcagggaacaaaggatgaggcttaatgtcaacaagacccacctgaatagtttttctgt 320
Query: 121 atcacccagcaatgagagatggtgtgtctacatggaaacaccagttcctctttccagatt 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcacccagcaatgagagatagtgtgtctacatggaaacaccagttcctctttccagatt 380
Query: 181 tcccatgaggttattaatgaaggtgcccaccccattaggtgccagcacaaaggacactat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccatgaggttattaatgaaggtgcccaccccattaggtgccagcacaaaggacactat 440
Query: 241 tatttgtacattcttttctggggttaaagcttgagatacctttttttgttgcaattctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttgtacattcttttctggggttaaagcttgagatacctttttttgttgcaattctct 500
Query: 301 agtgtggcattaggcactgggaaaaataataataacaagttgtgtttctcagagaatatt 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgtggcattaggcactggtaaaaataataataacaagttgtgtttctcagagaatatt 560
Query: 361 tgcccttgctgacaggaatcaaatttataatgctaggaaggcctggttttgattgccgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcccttgctgacaggaatcaaatttataatgctaggaaggcctggttttgattgccgcc 620
Query: 421 tttttgctgacagggtgggtggctggttaataaagctgatagctcacttctggaattgga 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttgctgagagggtgggtggctggttaataaagctgatagctcacttctggaattgga 680
Query: 481 agttcctgagctccaacacacctgcatctaatttggatctgcccgagtatctgtgctatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agttcctgagctccaacacacctgcatctaatttggatctgcccgagtatctgtgctatc 740
Query: 541 tggtgagagcaggg 554
||||||||||||||
Sbjct: 741 tggtgagagcaggg 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
