Query= MSMg01no298_k14.b1 MSMg01no298_k14.b1 CHROMAT_FILE:
MSMg01no298_k14.b1 PHD_FILE: MSMg01no298_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:24 2005
(561 letters)
>mm_chr18_41904958_41905918
Length = 961
Score = 1062 bits (549), Expect = 0.0
Identities = 558/561 (99%)
Strand = Plus / Plus
Query: 1 gtattactctttcaaatattcgtgtaaaattgagtatctaaagctcaatcaatccaggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtattactctttcaaatattcgtgtaaaattgagtatctaaagctcaatcaatccaggct 260
Query: 61 aggtatatacacatttgtgtgtaatttaagccttcaatgtatattacacattagagtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtatatacacatttgtgtgtaatttaagccttcaatgtatattacacattagagtgca 320
Query: 121 attttcttcttaaatatacagaatgtcccaggctccatggtgaccattatttctgcaaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttcttcttaaatatacagaatgtcccaggctccatggtgaccattatttctgcaaac 380
Query: 181 agagtttcagcctttgataatttgtctctaggtattttctgaattaatttcatggtttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagtttcagcctttgataatttgtctctaggtattttctgaattaatttcatggtttaa 440
Query: 241 aaataatatctaatacaacaatgagaagaatgtgaggttaaaagaaattagaaactgcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataatatctaatacaacaatgagaagaatgtgaggttaaaagaaattagaaactgcta 500
Query: 301 gtgtgtatatgtatgcaggaattgtacttatgctggccttttaagaataactctccaaat 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtttatatgtatgcaggaattgtacttatgctggccttttaagaataactctccaaat 560
Query: 361 cccttgtctctatcaaatcatcctgagaaaatgcactctcatttctgagtagtcctgggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 cccttgtctctatcaaatcatcctgagaaaatgcactctcatttctgagtaatcctgggc 620
Query: 421 cttggacgtcatcctttctcccatgtacagataattttggacaattagacttaacagcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttggacgtcatcctttctcccatgtacagataattttggacaattagacttaacagcca 680
Query: 481 tcaacactattcctggaggagataaactttaaaagtccttatgcttggacttgggcaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaacactattcctggaggagataaactttaaaagtccttatgcttggacttgggcaatg 740
Query: 541 gatcagtgggtaaactgctta 561
|||||||||||||||||||||
Sbjct: 741 gatcagtgggtaaactgctta 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_k14.g1 MSMg01no298_k14.g1 CHROMAT_FILE:
MSMg01no298_k14.g1 PHD_FILE: MSMg01no298_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:24 2005
(536 letters)
>mm_chr18_42048089_42049024
Length = 936
Score = 953 bits (493), Expect = 0.0
Identities = 513/521 (98%), Gaps = 3/521 (0%)
Strand = Plus / Minus
Query: 19 ttgagtcaaatggaggctctgtttcttagttactgtgtgggtttggataggatgttgaat 78
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 936 ttgagtcaaatggaggctctgttttttagttactgtgtgggtttggataggatgttgaat 877
Query: 79 gtctccaagctttggtgtcaccatcaaacacaagtaacagtcctttagggcagatgggag 138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gtctccaagctttggtgtcaccatcaaacacaagtaacagtcctttagggcagatgggaa 817
Query: 139 gtagaacaagtttgttctgggaaggttcacacacagtgttggcgcacagcacgtgctaac 198
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 816 gtagaacaagtttgttctgggaaggctcacacacagtgttggcgcacagcacgtgctaac 757
Query: 199 aaa---ttcttattgttatttggtcctgttccagtttttattagatgaagctagctctaa 255
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aaatctttcttattgttatttggtcctgttccagtttttattagatgaagctagctctaa 697
Query: 256 attgaaaagagctgggcatccaattaaaaggtgctttattgtgataaaatatctctttct 315
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 696 attgaaaagagctgggcatccaattaaaaggtgctttattgtgataaaatacctctttct 637
Query: 316 ggagagctttgctgaatgtttcttttatattttgatgagaaagctggatgcagatagctt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggagagctttgctgaatgtttcttttatattttgatgagaaagctggatgcagatagctt 577
Query: 376 cctcctttcacccctcccttcctcatgtttgtttctccctctccgttattcttcgcaaat 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cctcctttcacccctcccttcctcatgtttgtttctccctctccgttattcttcgcaaat 517
Query: 436 aatgcccatcctatcaggttctagtgtaggtgggattcagcagcagatagccatagcatc 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aatgcccatcctatcaggttctagtgtaggtgggattcagcagcagatagccatagcatc 457
Query: 496 tttctttgctctcatggagtataccttctgactgggagtga 536
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 456 tttctttgctctcatggaatataccttctgactgggagtga 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
