BAC Information

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BAC

Clone NameMSMg01-298P19
Chromosome18 (Build37)
Map Location 77,960,116 - 77,960,473
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik
Downstream geneCcdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155, Setbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298P19.T7 (MSMg01no298_p19.b1)MSMg01-298P19.TJ (MSMg01no298_p19.g1)
ACCAG425885AG425886
length744770
length of high quality
(start - end)
493 (42 - 534)359 (74 - 432)
definitionCHROMAT_FILE: MSMg01no298_p19.b1 PHD_FILE: MSMg01no298_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:47 2005CHROMAT_FILE: MSMg01no298_p19.g1 PHD_FILE: MSMg01no298_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCATATGCAAAAAGAGGGCGGAATTCCCAACTTGTTCCTAATATGCA
ATTTAGCCTGCTCTACCTGGCTGTAGTGAAGATTACTGTCTCAGTGGGAT
TCTCTTTCATGGTAAACCCACCTATTCGCTAGGTCCTTGTGTTTGGGCAA
GACCGGCTACTGTCCTAAGTAATCACTCTGCAGACTAGAGCTGCTGCGGC
TCCGTCCTTTGAAATGCTTAATTGGTTACTGAATAGATAACTTTCTTACT
GAATTCCTACTGAATTCCAAGTTTGCCTACTTCAAGTATTTTCTGGGACG
TTGGAACACTGGCGAAGGCTTAGCTATGTCAGAATTCAATCTTAAAAGGC
ACTTATAATAAGATAATACTAAAAGAGAGCACGTGGATCCATACACCAGA
CTAACTCGGGGATAGGGTGTGAGTATACGGGTTATGAGAAGTTCCAGGAG
GTGAGTTTCTTTGAAACTCTTTGCCTCGTGAGTGCTTCCAGGCCTCTCAG
CCTGCCAAGCAAACTTCACTAGAATGTGCGTAGCACCTAAGGATGAATCT
CTCAGTGCACTGTTGTCCGATAGAGAGAGAGACACACAGAGATAGAGAGA
GAGAGAGACTGGCAAGAGAACAGGCTGTCTACCATTCATGGAGAAAGGTC
CACAATTCACGCCTCCTTGACGGCCCTTATAATGAAACCAGTCTACATTC
GAGATTGTCAACAGCAAGCCCCCAATCTGGGACAGTGAATCTCC
CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTATCGGGGTNGA
ACTATAGAAGGTTCTCAGAAATTCTTCTGCCAAATATAAATGCAGATCAT
GGTAACCCCACCCTCCCAGTTTTCACATCTGGGAACCTTGCTGGGCTCAG
AAGCAGGACCATCTAACCTACTGAGCCCTCTAGACTGCGGCATTTAGGTG
ACACTGTCTGAGCGGGGCTGATTTATTGGATACTTCACTGGTGTCAAAGA
ATTGGCCGTCCCTCCTCACTTTCTCACCCCCTGGCCCAAGGGAGGTGAGG
AGGGGACCGCACACAGTGTCCTATTTTCTTGACTTTGAAAAATCCTTTTG
TTTTGAACTGAGTGTGTTAAGTTAAACAAAGCTGCTCCTACGCCTCATGT
GCACCTATCGTGACTGCCTGGCTGTCGAGGGCCAGCAAGCGCACTGCCCG
TTAGTTGCATTCCAAAGATAGCCTGAGAAGACCAGACAGACCTAAGCAAG
GTCTGCGGTGGGAAGCTTTGTGGATAATCATCTCCACAGGCGGTAAGGAA
TGTTCTGTGGACCAGACAGGCTCATAGAAGACTGTTCTCCTGACCAGGTT
TTGGGGACAATGAAAGTAATATCCGCGATCCTGGAATAGACCGTGGTCAC
CTGCCCCACACACCTCATCCCCCACCCCCGATAACTGCTTGCTCCTTAAT
TAACACCGTTACCACCCCCCCGCTCTTTCCCGCCCGGCAATCCCTGTAGG
TCCTCCTACCCCCATTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_p19.g1 MSMg01no298_p19.g1 CHROMAT_FILE:
MSMg01no298_p19.g1 PHD_FILE: MSMg01no298_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:47 2005
         (359 letters)



>mm_chr18_77959916_77960673
          Length = 758

 Score =  634 bits (328), Expect = 0.0
 Identities = 351/362 (96%), Gaps = 7/362 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctgccaaatataaatgcagatcatggtaaccccaccctcccagttttcacatctggg 60
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 201 cttctgccaaatataaatgcagattatggtaaccccaccctcccagttttcagatctggg 260

                                                                       
Query: 61  aaccttgctgggctcagaagcaggaccatctaacctactgagccctctagactgcggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccttgctgggctcagaagcaggaccatctaacctactgagccctctagactgcggcat 320

                                                                       
Query: 121 ttaggtgacactgtctgagcggggctgatttattggatacttcactggtgtcaaagaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaggtgacactgtctgagcggggctgatttattggatacttcactggtgtcaaagaatt 380

                                                                       
Query: 181 ggccgtccctcctcactttctcaccccctggcccaagggaggtgaggaggggaccgcaca 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccgtccctcctcaccttctcaccccctggcccaagggaggtgaggaggggaccgcaca 440

                                                                       
Query: 241 cagtgtcctatttt---cttgactttgaaaaatccttttgttttgaactgagtgtgttaa 297
           ||||||||||       |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cagtgtccta----aaacttgactttgaaaaatccttttgttttgaactgagtatgttaa 496

                                                                       
Query: 298 gttaaacaaagctgctcctacgcctcatgtgcacctatcgtgactgcctggctgtcgagg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gttaaacaaagctgctcctacgcctcatgtgcacctatcgtgactgcctggctgtcgagg 556

             
Query: 358 gc 359
           ||
Sbjct: 557 gc 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 758
Length adjustment: 9
Effective length of query: 350
Effective length of database: 749
Effective search space:   262150
Effective search space used:   262150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)