Query= MSMg01no299_a21.b1 MSMg01no299_a21.b1 CHROMAT_FILE:
MSMg01no299_a21.b1 PHD_FILE: MSMg01no299_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:52 2005
(719 letters)
>mm_chr18_72341129_72342246
Length = 1118
Score = 1353 bits (700), Expect = 0.0
Identities = 712/716 (99%), Gaps = 1/716 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctgttttcttcacatcaggttcaaaggacacattacttactaaataataatt 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgttttctttacatcaggttcaaaggacacattacttactaaataataatt 263
Query: 64 ccaaattcttaatggttttaataaatgaactttaaaatataattataagttagtaatccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaaattcttaatggttttaataaatgaactttaaaatataattataagttagtaatccc 323
Query: 124 atgccaaaattctgtcagtggtgtataaattagcatgaacatatgctaatgcataattca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgccaaaattctgtcagtggtgtataaattagcatgaacatatgctaatgcataattca 383
Query: 184 ccatttgcaacagggttttgttgaaaaattgatgaaaattcatcaaagagcctttctaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccatttgcaacagggttttgttgaaaaattgatgaaaattcatcaaagagcctttctaga 443
Query: 244 ttaagttacccaataaacaagtaactagaggcattcaaatgtagagtcaatatggcttct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaagttacccaataaacaagtaactagaggcattcaaatgtagagtcaatatggcttct 503
Query: 304 gaaattagcctttgtatgccttgcgaggctgttatgtgatgtagttaagatggcatttgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaaattagcctttgtatgccttgcgaggctgttatgtgatgtagttaagatggcatttgt 563
Query: 364 tacgcataagcatggggttctacatgtaagagctaatggggaatgaattgaaaggtcacc 423
||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 tacgcataagcattggcttctacatgtaagagctaatggggaatgaat-gaaaggtcacc 622
Query: 424 ttgctcaaattgtctacaaaccactgcagtaaatttgcttatctgtttattgaaaaaaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgctcaaattgtctacaaaccactgcagtaaatttgcttatctgtttattgaaaaaaat 682
Query: 484 atatatttttaccttgtcccattcaggagattctaaagtcaaaatatctattagaggatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atatatttttaccttgtcccattcaggagattctaaagtcaaaatatctattagaggatt 742
Query: 544 agaaatttacattttctttcaaacatcccagcagcttcttaaaatttacaagggtgagat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agaaatttacattttctttcaaacatcccagcagcttcttaaaatttacaagggtgagat 802
Query: 604 ttaagtgtctacaaaaaagaaactgaagctcttttatttgaggctacaaaaacacaccag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttaagtgtctacaaaaaagaaactgaagctcttttatttgaggctacaaaaacacaccag 862
Query: 664 aggaggatgagggactcaaacacccatactcctgatgctgcaccctccctctgttt 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aggaggatgagggactcaaacacccatactcctgatgctgcaccctccctctgttt 918
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1118
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1108
Effective search space: 785572
Effective search space used: 785572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no299_a21.g1 MSMg01no299_a21.g1 CHROMAT_FILE:
MSMg01no299_a21.g1 PHD_FILE: MSMg01no299_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:52 2005
(684 letters)
>mm_chr18_72522788_72523871
Length = 1084
Score = 1284 bits (664), Expect = 0.0
Identities = 679/684 (99%)
Strand = Plus / Minus
Query: 1 tataagaaaagaaaaatcccaagtttctcatggatcagggcaaggagttgtgccttctat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tataagaaaagaaaaatcccaagtttctcatggatcagggcaaggagttgtgccttctac 825
Query: 61 gatgctttacaaggtgaagtcagaaacaagaaattattcaattaagcctctgtagttcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gatgctttacaaggtgaagtcagaaacaagaaattattcaattaagcctctgtagttcac 765
Query: 121 tgctgtagcaacaaataggctattttggaagcagttctccagactctgaaggagtattcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tgctgtagcaacaaataggctattttggaagcagttctccagactctgaaggagtattcc 705
Query: 181 ctcagtaccagtgaacagagttgtgccaaagtaccaattttcaagagtattcaactgcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ctcagtaccagtgaacagagttgtgccaaagtaccaattttcaagagtattcaactgcag 645
Query: 241 aaatgacacttctctatgtgcaaaagaacctgcctttgttatttgctgagctagagggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aaatgacacttctctatgtgcaaaagaacctgcctttgttatttgctgagctagagggaa 585
Query: 301 agctcctttctcattttggaaatcaataaagctttttcttctattccatgagttattata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agctcctttctcattttggaaatcaataaagctttttcttctattccatgagttattata 525
Query: 361 gaaaatgctacccatgttccagaagatgacttgtagaagacaattactaagctggatcta 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 524 gaaaatgctacccatgttccagaagatgacttgtagaagacaattactaagctggagcta 465
Query: 421 gctctgctctccttgtggacagctgtttctaggctctggagtgttgatttgaaagctctg 480
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 464 gctctgctctccttgtggacagccgtttccaggctctggagtgttgatttgaaagctctg 405
Query: 481 aagaacatgcattcatgattctaggcagaggtatcccagctattataaagagtttacaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aagaacatgcattcatgattctaggcagaggtatcccagctattataaagagtttacaat 345
Query: 541 gtagatatttaaggtattttgttctagagaccaggctaagttcccctgtgattgatttct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gtagatatttaaggtattttgttctagagaccaggctaagttcccctgtgattgatttct 285
Query: 601 cataccagataatcaccagaatcccatttgaacagaagtttgagctaaagatgagatttt 660
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 284 cataccagataatcaccagaatcccgtttgaacagaagtttgagctaaagatgagatttt 225
Query: 661 aatagcaattcatgtctcaacaaa 684
||||||||||||||||||||||||
Sbjct: 224 aatagcaattcatgtctcaacaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
