BAC Information

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BAC

Clone NameMSMg01-299M14
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299M14.T7 (MSMg01no299_m14.b1)MSMg01-299M14.TJ (MSMg01no299_m14.g1)
ACCAG426463AG426464
length782768
length of high quality
(start - end)
370 (43 - 412)291 (71 - 361)
definitionCHROMAT_FILE: MSMg01no299_m14.b1 PHD_FILE: MSMg01no299_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:48 2005CHROMAT_FILE: MSMg01no299_m14.g1 PHD_FILE: MSMg01no299_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:48 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGAACTCTCTGTCCTTTCAGGTCCACATTTGCTCTGGCTCTGGCAA
CTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAATGGTAA
TGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCACTAGT
ACACTTTCACTAGAGCCTCACCCTGTCAGCAGTTTAGGAATTTGTAAAGC
CAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGTTTTTTT
TTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGC
ACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTAATACCCCCCCCGTGATTGCCGTAACTTGCAATCTAGTGGGCTT
ATGTTTGATTCCTGTAATCTTTTTTTCCAATTCCTTTTCCCTTTTATACT
TTATTTTACTTCACTTCATTTCTACTTTATCTTATTTTACCTCACGTCCA
TCCCCCCCACCCCCTCCCCCTCCCACCTCCCCGCCAATCCTTCGTATCTC
TTCCATCCCCCCCCACCCTTCCCTCACCTTCTCTCTCACCCTCCATCACT
CTTCCTTTCTTCCTTTACACTCTACCATTTCTCTACCCCCACTCCCACCC
AACTTTACCTTCACTCCCTCCTCCCCTCTCCCTCATATCTCACACCTCAT
ACCTTACCTACCCTCCCCCTCTCTTTCCTACG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCGTTCATGGGGAATAATTGCAATCCCCG
ATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAG
GGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACA
TCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGC
CACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCGT
AACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA
ATCGCTCCACCAACTAATAACGGCCATGCACCACCACCCACGGAATCGAG
AAAGAGCTATCAACCCGCCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTT
TCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCT
TCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCCGGAA
CCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCCTGGGAATAAC
GCCGCCGCATCCCCAGTCGGTATTGTTTATGGCCGGAACTACGAAGGTAT
CTGATCGCCTTCTAACCCTCGACTTTCCTCCCTGCATAATGGACACATTT
CTGGTCAATGTTTTTCCTTCTGGTCCCCCCTCTGCTCCTGTCCCCAAACT
TTCACCCCCTACGCGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_m14.b1 MSMg01no299_m14.b1 CHROMAT_FILE:
MSMg01no299_m14.b1 PHD_FILE: MSMg01no299_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:48 2005
         (370 letters)



>mm_chr18_40467472_40468241
          Length = 770

 Score =  362 bits (187), Expect = e-104
 Identities = 235/251 (93%), Gaps = 2/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaactctctgtcctttcaggtccacatttgctctggctctggcaactgact 64
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 395

                                                                       
Query: 65  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 394 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 336

                                                                       
Query: 125 ccctaacagaaagaggaatgctccactcactagtacactttcactag-agcctcaccctg 183
           | |||||||||||||||| |||||||||||||| | ||||||||||| |||||| |||||
Sbjct: 335 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 276

                                                                       
Query: 184 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 243
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 275 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 216

                      
Query: 244 acttcatgttt 254
           |||||||||||
Sbjct: 215 acttcatgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)