Query= MSMg01no300_g14.b1 MSMg01no300_g14.b1 CHROMAT_FILE:
MSMg01no300_g14.b1 PHD_FILE: MSMg01no300_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:33 2005
(313 letters)
>mm_chr18_69115324_69116036
Length = 713
Score = 524 bits (271), Expect = e-153
Identities = 302/315 (95%), Gaps = 10/315 (3%)
Strand = Plus / Minus
Query: 5 gaattctcttccgcttttgtttggaggaaagtcagaagagg-attttctctgagtctgac 63
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 581 gaattctcttccgcttttgtttggaggaaagtcagacg-ggtattttctctgagtctgac 523
Query: 64 ---g-gt---acgttctgattgcccacatcagtgctagtctccactttttagggctgtcc 116
| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agagagtctga-gttctgattgcccacatcagtgctagtctccactttttagggctgtcc 464
Query: 117 tcaaaaacaacaaccactcagtcaaaggcatcgattgttctttgttggtttccctggtct 176
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcaaaaacaacaaccacccagtcaaaggcatcgattgttctttgttggtttccctggtct 404
Query: 177 tacataactttggtgggggtgggactaggagataaagcatctccagaatgcagtattgtg 236
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tacataactttcgtgggggtgggactaggagataaagcatctccagaatgcagtattgtg 344
Query: 237 ggaacacacatgtttttaatctcctattttccagaagatagccagaagggatccccacgg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggaacacacatgtttttaatctcctattttccagaagatagccagaagggatccccacgg 284
Query: 297 ggtcacttggagaag 311
|||||||||||||||
Sbjct: 283 ggtcacttggagaag 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_g14.g1 MSMg01no300_g14.g1 CHROMAT_FILE:
MSMg01no300_g14.g1 PHD_FILE: MSMg01no300_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:33 2005
(273 letters)
>mm_chr18_69016004_69016680
Length = 677
Score = 470 bits (243), Expect = e-137
Identities = 265/275 (96%), Gaps = 6/275 (2%)
Strand = Plus / Plus
Query: 1 atgacatagaaaaaaagtgtccaacgagtattgttgaatgaaaatgtgcgaaggcactcc 60
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 201 atgacatagaaaaaaagtgtccaacgagtattgttgaatgaacatgtgtgaaggcactcc 260
Query: 61 atcagcgtggagtgggcagacatctagatatttctgaaactggacaaattcaggctagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcagcgtggagtgggcagacatctagatatttctgaaactggacaaattcaggctagca 320
Query: 121 tttggataatggtctttttttttta----aatgaaacatgctaaaatgaaatccacatgc 176
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 321 tttggataatggtctttttttttttttttagtgaaacatgctaaaatgaaatccacatgc 380
Query: 177 ttccttgttttttgtttttgtttttgttttgtgtgtgtgtgtgcttttgtgtattttttt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccttgttttttgtttttgtttttgttttgtgtgtgtgtgtgcttttgtgtattttttt 440
Query: 237 tttttgattttttggtttttgttttgttttgtttg 271
||| ||||||||||||||||||||||||||||||
Sbjct: 441 ttt--gattttttggtttttgttttgttttgtttg 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 677
Length adjustment: 9
Effective length of query: 264
Effective length of database: 668
Effective search space: 176352
Effective search space used: 176352
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
