Query= MSMg01no301_g18.b1 MSMg01no301_g18.b1 CHROMAT_FILE:
MSMg01no301_g18.b1 PHD_FILE: MSMg01no301_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:49 2005
(575 letters)
>mm_chr18_68049026_68050000
Length = 975
Score = 1023 bits (529), Expect = 0.0
Identities = 562/573 (98%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatttggtagcaatgagcttcccagttccacagaccttctggtccaagaggccc 63
|||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 204 ggaaatcatttgggagaaatgagcttcccagttccacagaccttctggtccacgaggccc 263
Query: 64 tggagcagtggcttttctgcaaaatgtggggtcttacttagtgaaggagatttctccaga 123
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 tggagcagtggcttttctgcaaaatgtgtggtcttacttagtgaaggagatttctccaga 323
Query: 124 aacgttccgtcacgaaggtgagtggaaggggggagatgtcatggaggaccgaagccagaa 183
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacgttccatcacaaaggtgagtggaaggggggagatgtcatggaggaccgaagccagaa 383
Query: 184 caactcctgaaaggcttcttttctattctcgtttcatactctaaaaccacaaggtgggtt 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 caactcctgaaaggcttcttttcaattctcgtttcatactctaaaaccacaaggtgggtt 443
Query: 244 ttagagaagcccatgtgctgttaaaggcagtgacccatggttcagcagtttctctgggtc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttagagaagcccatgtgctgttaaaggcagtgacccatggttcagcagtttctctgggtc 503
Query: 304 gttttgttccaggtggcaagtgaagttatgcttagcaaatagacagtacaagcagtgctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttttgttccaggtggcaagtgaagttatgcttagcaaatagacagtacaagcagtgctt 563
Query: 364 taagtaaatcactgaaaaagaaaatcagtatctaagtttcttactggtctttttt-cctt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 taagtaaatcactgaaaaagaaaatcagtatctaagtttcttactggtctttttttcctt 623
Query: 423 tattcaatcacaaccattctctgattgggtttgaggccgctctgcgggagggaattcaca 482
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 624 tattcaatcacaaccattctctgattgggtttgaggccgctctgcaggagggaattcaca 683
Query: 483 tctgggacctgcaaagtcagccaaagaaaccctattactgggcagtgcggaatccctaca 542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 684 tctgggacctgcaaagtcagccaaagaaaccctattactgggcagtgcg-aatccctaca 742
Query: 543 ggagaacggagttttggttacctaaattgatac 575
|||||||||||||||||||||||||||||||||
Sbjct: 743 ggagaacggagttttggttacctaaattgatac 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_g18.g1 MSMg01no301_g18.g1 CHROMAT_FILE:
MSMg01no301_g18.g1 PHD_FILE: MSMg01no301_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:49 2005
(280 letters)
>mm_chr18_68147183_68147863
Length = 681
Score = 507 bits (262), Expect = e-148
Identities = 276/281 (98%), Gaps = 1/281 (0%)
Strand = Plus / Minus
Query: 1 agggggaaggagggagctggaaataacctaagcgact-taacccagacccaggaagacaa 59
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 478 agggggaaggagggagctggaaataacctaagcgactgtaacccagacccaggaagacaa 419
Query: 60 tagatgatgcaaatcacagcttggaatctttagatttgtgtgtttaactcggagcgctta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 418 cagatgatgcaaatcacagcttggaatctttagatttgtgtgtttaactcggagtgctta 359
Query: 120 acaagaaggtagaaagggaccttttagagtggaagggaggaaagaagccctcgggggtgg 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 acaagaaggtagaaaggggccttttagagtggaagggaggaaagaagccctcgggggtgg 299
Query: 180 tgaacaggctagcccactgcaatccgaaagcagtgggtgggaatgttggaagtggaaagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgaacaggctagcccactgcaatccgaaagcagtgggtgggaatgttggaagtggaaagg 239
Query: 240 tttaagggagatggcaatgggcagatggtgaggaagggncc 280
|||||||||||||||||||||||||||||||||||||| ||
Sbjct: 238 tttaagggagatggcaatgggcagatggtgaggaagggccc 198
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 681
Length adjustment: 9
Effective length of query: 271
Effective length of database: 672
Effective search space: 182112
Effective search space used: 182112
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
