BAC Information

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BAC

Clone NameMSMg01-301I07
Chromosome18 (Build37)
Map Location 27,732,676 - 27,732,995
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646, EG271505, EG625997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301I07.T7 (MSMg01no301_i07.b1)MSMg01-301I07.TJ (MSMg01no301_i07.g1)
ACCAG427696AG427697
length734740
length of high quality
(start - end)
326 (40 - 365)474 (70 - 543)
definitionCHROMAT_FILE: MSMg01no301_i07.b1 PHD_FILE: MSMg01no301_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:56 2005CHROMAT_FILE: MSMg01no301_i07.g1 PHD_FILE: MSMg01no301_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AATGCAATCTGAACTAAAAGGCCTAGGGTTTGAACTGACAGCCAGTGACC
CTGCAGTTCCATCACTCTTCCTTATAAAACAGGGTATGTTGTCAATGTAA
AAATAAATTCAAGAGTAACAATATTGAGAGCTGACTGGAACTAAACAATA
TCCAGTAGCAAGAAATTACTCAGAAACAACAAAGGGAGAGCAACAAACGA
GGGAGAAAATGGGAAAAGCATAGATGCATGCTATCAGCCTGCTCTTCCAA
GCTTTTGAAGTTTCCTGATGTCATGGAAAATACTTTTCACAGTGGGGTGT
GTTTTATATATTTCTCTATCTTCTTCCTATATTTATTCCATCTATAATAC
TTTTACAGTGTCTCCTAACTGTATGTAAACAATGCTTTCAACAAATTTTT
ATTATGGACAAATTATTTTGGGTGCTAAGTAATTTTAGTCCCCTCTTCTC
GAAATTCATCAGTCACTAACATAAATCTTTTTAAATAATGGCTGTATTTT
ACATATGCTGTGTTGTATGGATGGTGATACTTTCTTTCATTATCAACATG
ATTCTATACTCTCTGATGGTCAAACCTATGATCCTCATATAACTCAATAT
GCAAAGGACATTAAAACAGTTCCACTAAAGAAGAATAGAATGACTCCTGG
TGTAGCTCTTCTGATATGATATTTAAATGATTTA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTAATTTCTTTCTTTATTCCTTCCTTGACC
AAGGTATCATTGAGAAGAGTGTTGTTCAGTTTCCACGTGAATGTTGGCTT
TCTATTATTTATTTTGTTATTGAAGATCAGCCTTAGTCCATGGTGATCTG
ATAGGATGCATGGGACAATTTCAATATTTTTGTATCTGTTGAGGCCTGTT
TTGTGACCTATTATGTGGTCAATTTTGGAGAAGGTACCATGAGGTGCTGA
GAAGAAGGTATATCCTTTTGTTTTAGGATAAAATGTTCTGTAGATATCTG
TCAGATCCATTTGTTTCATAACTTCTGTTAGTTTCACTGTGTCCCTGTTT
AGTTTCTGTTTCCATGACCTGTCCATTGGTGAAAGTGGTGTGTTGAAGTC
TCCCACTATTATTGTGTGAGGTGCAATGTGTGCTTTGAGCTTTACTAAAG
TTTCTTTAATGAATGTGGCTGCCCTTGTATTTGGAGCATACATATCCATA
ATTGATAGTTCCTCTTGGAAGATTTTACCTTTGATGATAATGAATTGCCC
CTCTCTGTCTTTTTTGATGACCTTGTCTTGTAAGTCTTTGGATGGTTACT
CCTGTCTCTTTCTTCCTTTCCTCTGCTTGTTATTTTTTTTTCCCACCTTT
TCTCCCTGTATGTCCTGCCCTTTTCCTCTCTCCGTAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_i07.b1 MSMg01no301_i07.b1 CHROMAT_FILE:
MSMg01no301_i07.b1 PHD_FILE: MSMg01no301_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:56 2005
         (326 letters)



>mm_chr18_27732471_27733196
          Length = 726

 Score =  603 bits (312), Expect = e-177
 Identities = 318/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcaaatgcaatctgaactaaaaggcctagggtttgaactgacagccagtgaccctgc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aattcaaatgcaatctgaactaaaaggcctagggtttgaactgacagccagtgaccctgc 466

                                                                       
Query: 66  agttccatcactcttccttataaaacagggtatgttgtcaatgtaaaaataaattcaaga 125
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agttccatcactcttgtttataaaacagggtatgttgtcaatgtaaaaataaattcaaga 406

                                                                       
Query: 126 gtaacaatattgagagctgactggaactaaacaatatccagtagcaagaaattactcaga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gtaacaatattgagagctgactggaactaaacaatatccagtagcaagaaattactcaga 346

                                                                       
Query: 186 aacaacaaagggagagcaacaaacgagggagaaaatgggaaaagcatagatgcatgctat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aacaacaaagggagagcaacaaacgagggagaaaatgggaaaagcatagatgcatgctat 286

                                                                       
Query: 246 cagcctgctcttccaagcttttgaagtttcctgatgtcatggaaaatacttttcacagtg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cagcctgctcttccaagcttttgaagtttcctgatgtcatggaaaatacttttcacagtg 226

                               
Query: 306 gggtgtgttttatatatttc 325
           ||||||||||||||||||||
Sbjct: 225 gggtgtgttttatatatttc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)