Query= MSMg01no302_a18.b1 MSMg01no302_a18.b1 CHROMAT_FILE:
MSMg01no302_a18.b1 PHD_FILE: MSMg01no302_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:35 2005
(550 letters)
>mm_chr18_40532160_40533109
Length = 950
Score = 893 bits (462), Expect = 0.0
Identities = 468/470 (99%)
Strand = Plus / Plus
Query: 5 gaattcttaggacgtacaatttgtggttagtttcatagctctttcatggcggtcatgact 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaggacgtagaatttgtggttagtttcatagctctttcatggcggtcatgact 264
Query: 65 aagaagacagagcccaagtcaaactgactgtaaactggcctgggatgtattcacacctca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaagacagagcccaagtcaaactgactgtaaactggcctgggatgtattcacacctca 324
Query: 125 atgttcacctctgtcttctatgatgaactgtcacattttgcaacacatttcattttgcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgttcacctctgtcttctatgatgaactgtcacattttgcaacacatttcattttgcct 384
Query: 185 tttctgaggaaaaaaaaaaccccaacaaactaattagtagcaagaggaggtgaaatgcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttctgaggaaaaaaaaaaccccaacaaactaattagtagcaagaggaggtgaaatgcta 444
Query: 245 gaagcaatcaatacttcctcctttactgctgggtttaatggacagttctatgccaaaccg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaagcaatcaatacttcctcctttactgctgggtttaatggacagttctatgccaaaccg 504
Query: 305 cccaaagcacattatgtacttttagaatacccaaatacttaattgatacatcctaaagct 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 cccaaagcacattatgtacttttagaatacccaaatatttaattgatacatcctaaagct 564
Query: 365 ccaagaaggaagttatctacccagagttacatcctctctctggagacctagggttctcta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccaagaaggaagttatctacccagagttacatcctctctctggagacctagggttctcta 624
Query: 425 atttttcagagagagagagagagagagagagagagagagagagagagaga 474
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttttcagagagagagagagagagagagagagagagagagagagagaga 674
Score = 80.0 bits (41), Expect = 4e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 432 agagagagagagagagagagagagagagagagagagagaga 472
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Score = 80.0 bits (41), Expect = 4e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 434 agagagagagagagagagagagagagagagagagagagaga 474
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Score = 80.0 bits (41), Expect = 4e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 436 agagagagagagagagagagagagagagagagagagagaga 476
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Score = 80.0 bits (41), Expect = 4e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 438 agagagagagagagagagagagagagagagagagagagaga 478
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Score = 80.0 bits (41), Expect = 4e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 440 agagagagagagagagagagagagagagagagagagagaga 480
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Score = 80.0 bits (41), Expect = 4e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 442 agagagagagagagagagagagagagagagagagagagaga 482
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Score = 80.0 bits (41), Expect = 4e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 444 agagagagagagagagagagagagagagagagagagagaga 484
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Score = 80.0 bits (41), Expect = 4e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 446 agagagagagagagagagagagagagagagagagagagaga 486
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Score = 80.0 bits (41), Expect = 4e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 448 agagagagagagagagagagagagagagagagagagagaga 488
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Score = 80.0 bits (41), Expect = 4e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 450 agagagagagagagagagagagagagagagagagagagaga 490
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Score = 72.3 bits (37), Expect = 9e-17
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 456 agagagagagagagagagagagagagagagagagacagaga 496
||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Score = 64.5 bits (33), Expect = 2e-14
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 462 agagagagagagagagagagagagagagacagagacagaga 502
||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 1 agagagagagagagagagagagagagagagagagagagaga 41
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 45
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 15
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no302_a18.g1 MSMg01no302_a18.g1 CHROMAT_FILE:
MSMg01no302_a18.g1 PHD_FILE: MSMg01no302_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:36 2005
(286 letters)
>mm_chr18_40700541_40701226
Length = 686
Score = 542 bits (280), Expect = e-158
Identities = 283/284 (99%)
Strand = Plus / Minus
Query: 1 ttgaaccttgttagaacgtttgattttaaagcataaagaaaagacattttctttcctcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttgaaccttgttagaacgtttgattttaaagcataaagaaaagacattttctttcctcaa 425
Query: 61 gccttcaacaccacacctgcagaggacttctggaattcagttgctcactagtgtgcctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gccttcaacaccacacctgcagaggacttctggaattcagttgctcactagtgtgcctgg 365
Query: 121 gtatctggctcagtgagcactttggataggttcccaagagaaggagtcatgctctatcaa 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 364 gtatctggctcagtgagcactttggataggttcccaagagaagaagtcatgctctatcaa 305
Query: 181 ctgagccttggtttggggagtagactggctttgaagggtcagagttaatgtgcttacata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctgagccttggtttggggagtagactggctttgaagggtcagagttaatgtgcttacata 245
Query: 241 ctgaacccaagaagcaccggggaagcattcgtagattggcttca 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctgaacccaagaagcaccggggaagcattcgtagattggcttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
