BAC Information

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BAC

Clone NameMSMg01-303G16
Chromosome18 (Build37)
Map Location 5,216,876 - 5,217,217
singlet/doubletsinglet
Overlap geneZfp438
Upstream geneLOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil
Downstream geneLOC100039442, Zeb1, EG664925, Arhgap12, Kif5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303G16.T7 (MSMg01no303_g16.b1)MSMg01-303G16.TJ (MSMg01no303_g16.g1)
ACCAG429016AG429017
length739745
length of high quality
(start - end)
44 (245 - 288)342 (381 - 722)
definitionCHROMAT_FILE: MSMg01no303_g16.b1 PHD_FILE: MSMg01no303_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:19 2005CHROMAT_FILE: MSMg01no303_g16.g1 PHD_FILE: MSMg01no303_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCAAACGACTCACATTTCCCACCCGCCNCGGAANNCCNNNGT
TGCGGGAGCNGANAANNNAGNGNGGGNGAGAGAGANGGNGNGNANAGANA
NGTTTGCCCACGCAAGAACCAGGGNAGGNGGGCAGAGGNCACAGGACAAA
NAACGGGGAGGAACGNNCCCCGCNCCACCACGAGCANNCCAGGGACCAAA
CCCACACCCGACGGGGCCAACCAGCAGGCCCAGACTTTTTTTGCTTTTAC
CAAAGCAATGACTTACTTAGTTGATCATTTCAGAAGNCATAGGAACCCGG
GTTTTTTTTATTTTGACAGCCGCGCAGCGGCGACCCNAAAAAAGGAAAAG
AGACCCCCCCCCCGNGAAGAGAAAACCCAGACAAGAGCCCGACANGGAAA
CCGCAGACCACAGCAGACAGGAACAACGGAAAAGCAAAGCACCCCAGGAA
GGGGCCCACNCAGAACCCCAACAGCACACCCCACAGGCCAGGCAGCCAAA
CACACCAAGGGAGCGAAAACGGAGCACGCAAACAAAGGAAACACACACAC
CCAACGGAAGAGGAGCCCGGCACCCCACAAAGACACACCGGGGAGAAAAA
GGAGAGCACCACACCCCGGAGGAAGCCCCCAGACCTTTTTTTTTTTTTTG
TAGGCCGGGGAAAACCGGGACAGCGCGCGGCGTCGTTACAGGCTGAGTCC
ATATTAAGCATAAAGGCCAAACCATTACCTTCGGTAGCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGGATAGAAATGTGGGAATCTAAAAATCTA
ATGAAATACAGGATAACAGTTTTACAATCAATCCCTTTTGACTGCAGTTT
CACTGTGAGCCAACAATTTGAAAGAAAGTTGCTTGTAAACACTATGTTAA
TATAAGCAACATAATAGGAATAACTTGCAAAGTATGAAAACTTCTTTAGA
AAGTTCTTTACTATTACGTTAGGAGGCACCTATTGCTACCTGTATGAGAG
TAAGCTGCACACAATAGCTGCATCTCTTCAACATAGAAGGGGCAGAATTA
TACAGTATTTTCTATGACACCACACACACAAGATGTTGTGATGGCTTTAG
AGCTCTCTAGGAGATGAACTTCTGAAAAGAGGTTTTACTAAGGAGGCAGG
TCCATAGGACCTGCTGGGGTGCTGGTAGAATGCAAAGGATGAAGGCCATT
AGCATTGCTTGTTACCTGCTTCCTGACTGGCTTCAGTGTGAGCAGCCTCT
CAGGCCCCACCATTCTCCCCTCAAACCCCCTTCCTCCCTATCCTGCCTCA
AGTGCATTTTGTCACAGCAGGAAGAAGATCAACCAACCAGAGACCAAGTG
TAGATGTAAGCAAAGGGCATTCCTGGAGGTAGCCAGCTCTGCCCCAGCAA
GGTCACATGCTGATTACCTGAGGGAACAGTGTGGATAGCCTGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_g16.g1 MSMg01no303_g16.g1 CHROMAT_FILE:
MSMg01no303_g16.g1 PHD_FILE: MSMg01no303_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:19 2005
         (342 letters)



>mm_chr18_5216676_5217417
          Length = 742

 Score =  623 bits (322), Expect = 0.0
 Identities = 337/342 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgttgtgatggctttagagctctctaggagatgaacttctgaaaagaggttttacta 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 201 agatgttgtgatggctttagagctctctaggagatgaacttctgggaagaggttttacta 260

                                                                       
Query: 61  aggaggcaggtccataggacctgctggggtgctggtagaatgcaaaggatgaaggccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaggcaggtccataggacctgctggggtgctggtagaatgcaaaggatgaaggccatt 320

                                                                       
Query: 121 agcattgcttgttacctgcttcctgactggcttcagtgtgagcagcctctcaggccccac 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcattgcttgtcacctgcttcctgactggcttcagtgtgagcagcctctcaggccccac 380

                                                                       
Query: 181 cattctcccctcaaacccccttcctccctatcctgcctcaagtgcattttgtcacagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattctcccctcaaacccccttcctccctatcctgcctcaagtgcattttgtcacagcag 440

                                                                       
Query: 241 gaagaagatcaaccaaccagagaccaagtgtagatgtaagcaaagggcattcctggaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagaagatcaaccaaccagagaccaagtgtagatgtaagcaaagggcattcctggaggt 500

                                                     
Query: 301 agccagctctgccccagcaaggtcacatgctgattacctgag 342
           | ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 acccagctctgccccagcaagatcacatgctgattacctgag 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)