BAC Information

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BAC

Clone NameMSMg01-303L18
Chromosome18 (Build37)
Map Location 54,182,910 - 54,346,078
singlet/doubletdoublet
Overlap geneLOC667360
Upstream geneLOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3, EG433184
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303L18.T7 (MSMg01no303_l18.b1)MSMg01-303L18.TJ (MSMg01no303_l18.g1)
ACCAG429239AG429240
length750746
length of high quality
(start - end)		709 (42 - 750)669 (70 - 738)
definitionCHROMAT_FILE: MSMg01no303_l18.b1 PHD_FILE: MSMg01no303_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:43 2005CHROMAT_FILE: MSMg01no303_l18.g1 PHD_FILE: MSMg01no303_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,182,910 - 54,183,613)(54,345,410 - 54,346,078)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTCTGTTTTCCAGAAAGCACTCGGGAGAAGCATCTTTTCTTCCTTTAA
ACCATGGCCTTGCCTATAGCATTTACCCCATCACACAGGATGAGGAAGTG
CGTTGGATTCAGTGTAGAAGATAGGTTGGCTATGTGTGCCATCTCCTGCT
GCAGCGAGCCCAGGCACATAGTCTACTGTGAAGTAGCACAGGCAATGTAT
TTCCTGCATCTGTCAGATCCTTCTCAGGTTAGCATGTGTTTCCTGTACTG
TGTCACCACAGCTGTGTGGGCAGGAGAGCTGTTCAGTAGGTAAAGAACCA
AAGGCTCTACAGACCAGACTCACAAGTCTATTAAAACAAACATGACTTTT
AGAAGTACAATAAAAATTTCAGTGAGCAGTCCTTCTCCCGTGACTGAGGC
CTCATTGTTTGTCCATGGATACCTTTGAAGAGTCTGCTTTCCTGGGAGAG
AGAGGGAGGGGGCTTATTGGCGCCAAAAGTCAGTGTGCGTCAAGTGAAAA
GTGCAAGGTAGAGGCGGCGCCATTTTCGGCTCCAGACAACCTGCCACCTT
CCTGGTCAGAGCACAGGTGTCCGCCCAGCCTGGGAGGCTTCTGCCTCACA
TTCCGCGGGGGTCACCTTGGTTCCGAGACCCCGCAGCGGGTGGTCTACGG
GTGAGAGTGTGGAACACAGAGGCCAGCAGCTTCTGGAACGGGCGAGAGCN


ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGAGCCAGGCACTGCGTGCGACAGGAACAC
TGATGCAAGAGGAACAACCACCATTCTGTCCGGCTGCAGCAATGGCTAAC
CCAGATTCCTAGTGTTCTACAACATGAGATTTATTTCCCTGTCCATGCTG
CACAGTTCCAGGTTGAGTTGGGATCTTTTCCACATGTCATTTTGTTCTGA
GATTCAGGTTGAAAGCCCTGATCGAGAATAAGCAATTCTTTTTGACATGA
GAAAGAACATGCCAGTTAGCAAAGACAGCAGTGTTTCTGAACACTTCTGG
TGAGAAGTGGGTCTGTGCTCTCCCCCCATTTCATTGCTCTGTGCAAGTCA
CACAGCCAAACACAAGGACTGGGAAAGTATCTTCTCTCATTTGAAAATAG
TAGCAGGAAGAAATAAATCTATTCACTAGAAATAGTAGTATTCTAAATAA
CTTCACCACATTCCAAAATTAAAGGAGGGAAAAATGGCCTTTAGTATTCG
GGTATAATTAATCTTCCCTGTCAATTGGATTGGAATCAAAATCTCCTAGA
TGTGATCTATCTCTCAGTGTGTCTATGACGGGTTTAACTGAGGAGGGAAG
ACCCACCACCAATGTGGGCATCACCCTTCCATGGGCTATGACGTCCCAGC
ATCTAGGACCTAGACTGAATGAAGAGGAACAAAGAAGAAAGAGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_l18.b1 MSMg01no303_l18.b1 CHROMAT_FILE:
MSMg01no303_l18.b1 PHD_FILE: MSMg01no303_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:43 2005
         (709 letters)



>mm_chr18_54182706_54183814
          Length = 1109

 Score = 1307 bits (676), Expect = 0.0
 Identities = 697/704 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctgttttccagaaagcactcgggagaagcatcttttcttcctttaaaccat 64
           ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcactctgttttctagaaagcactcgggagaagcatcttttctttctttaaaccat 264

                                                                       
Query: 65  ggccttgcctatagcatttaccccatcacacaggatgaggaagtgcgttggattcagtgt 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 ggccttgcctatagcatttaccccatgacacaggatgaggaagtgcgttggattcagtgt 324

                                                                       
Query: 125 agaagataggttggctatgtgtgccatctcctgctgcagcgagcccaggcacatagtcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaagataggttggctatgtgtgccatctcctgctgcagcgagcccaggcacatagtcta 384

                                                                       
Query: 185 ctgtgaagtagcacaggcaatgtatttcctgcatctgtcagatccttctcaggttagcat 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 ctgtgaagtagcacaggcaatgtatttcctgcatctgtcagatccctctcaggttagcat 444

                                                                       
Query: 245 gtgtttcctgtactgtgtcaccacagctgtgtgggcaggagagctgttcagtaggtaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtttcctgtactgtgtcaccacagctgtgtgggcaggagagctgttcagtaggtaaag 504

                                                                       
Query: 305 aaccaaaggctctacagaccagactcacaagtctattaaaacaaacatgacttttagaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 aaccaaaggctctacagaccagactcacaagtctattaaaacaaacatggcttttagaag 564

                                                                       
Query: 365 tacaataaaaatttcagtgagcagtccttctcccgtgactgaggcctcattgtttgtcca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacaataaaaatttcagtgagcagtccttctcccgtgactgaggcctcattgtttgtcca 624

                                                                       
Query: 425 tggatacctttgaagagtctgctttcctgggagagagagggagggggcttattggcgcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggatacctttgaagagtctgctttcctgggagagagagggagggggcttattggcgcca 684

                                                                       
Query: 485 aaagtcagtgtgcgtcaagtgaaaagtgcaaggtagaggcggcgccattttcggctccag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaagtcagtgtgcgtcaagtgaaaagtgcaaggtagaggcggcgccattttcggctccag 744

                                                                       
Query: 545 acaacctgccaccttcctggtcagagcacaggtgtccgcccagcctgggaggcttctgcc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acaacctgccaccttcctggtcagagcacaggtgtccgcccagcctgggaggcttctgcc 804

                                                                       
Query: 605 tcacattccgcgggggtcaccttggttccgagaccccgcagcgggtggtctacgggtgag 664
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 805 tcacattccgcgggggtcaccttggttccgagaccccgcggcgggtggtctgcgggtgag 864

                                                       
Query: 665 agtgtggaacacagaggccagcagcttctggaacgggcgagagc 708
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 agtgtggaacacagaggccagcagcttctggaacgggcgagagc 908


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no303_l18.g1 MSMg01no303_l18.g1 CHROMAT_FILE:
MSMg01no303_l18.g1 PHD_FILE: MSMg01no303_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:43 2005
         (669 letters)



>mm_chr18_54345053_54346121
          Length = 1069

 Score = 1224 bits (633), Expect = 0.0
 Identities = 660/669 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    aagagccaggcactgcgtgcgacaggaacactgatgcaagaggaacaaccaccattctgt 60
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1026 aagagccaggcactgcgtgcgacaggaacactgatgcaggaggaacagccaccattctgt 967

                                                                        
Query: 61   ccggctgcagcaatggctaacccagattcctagtgttctacaacatgagatttatttccc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  ccggctgcagcaatggctaacccagattcctagtgttctacaacatgagatttatttccc 907

                                                                        
Query: 121  tgtccatgctgcacagttccaggttgagttgggatcttttccacatgtcattttgttctg 180
            ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 906  tgtccatgctgcacagttccaggttgagttgggctcctttccacatgtcattttgttctg 847

                                                                        
Query: 181  agattcaggttgaaagccctgatcgagaataagcaattctttttgacatgagaaagaaca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  agattcaggttgaaagccctgatcgagaataagcaattctttttgacatgagaaagaaca 787

                                                                        
Query: 241  tgccagttagcaaagacagcagtgtttctgaacacttctggtgagaagtgggtctgtgct 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  tgccagttagcaaagacagcagtgtttctgaacacttctggtgagaagtgggtctgtgct 727

                                                                        
Query: 301  ctccccccatttcattgctctgtgcaagtcacacagccaaacacaaggactgggaaagta 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  ctccccccatttcattgctctgtgcaagtcacacagccaaacacaaggactgggaaagta 667

                                                                        
Query: 361  tcttctctcatttgaaaatagtagcaggaagaaataaatctattcactagaaatagtagt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  tcttctctcatttgaaaatagtagcaggaagaaataaatctattcactagaaatagtagt 607

                                                                        
Query: 421  attctaaataacttcaccacattccaaaattaaaggagggaaaaatggcctttagtattc 480
            |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 606  attctaaatagcttcaccatattccaaaattaaaggagggaaaaatggcctttagtactc 547

                                                                        
Query: 481  gggtataattaatcttccctgtcaattggattggaatcaaaatctcctagatgtgatcta 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546  gggtataattaatcttccctgtcaattggattggaatcaaaatctcctagatgtgatcta 487

                                                                        
Query: 541  tctctcagtgtgtctatgacgggtttaactgaggagggaagacccaccaccaatgtgggc 600
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 486  tctctcagtgtgtctatgaggggtttaactgaggagggaagacccaccaccaatgtgggc 427

                                                                        
Query: 601  atcacccttccatgggctatgacgtcccagcatctaggacctagactgaatgaagaggaa 660
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 426  atcacccttccatgggctgtgacgtcccagcatctaggacctagactgaatgaagaggaa 367

                     
Query: 661  caaagaaga 669
            |||||||||
Sbjct: 366  caaagaaga 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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