BAC Information

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BAC

Clone NameMSMg01-304C08
Chromosome18 (Build37)
Map Location 66,761,783 - 66,762,436
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
Downstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304C08.T7 (MSMg01no304_c08.b1)MSMg01-304C08.TJ (MSMg01no304_c08.g1)
ACCAG429525AG429526
length1,3311,341
length of high quality
(start - end)
654 (94 - 747)399 (129 - 527)
definitionCHROMAT_FILE: MSMg01no304_c08.b1 PHD_FILE: MSMg01no304_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:23 2005CHROMAT_FILE: MSMg01no304_c08.g1 PHD_FILE: MSMg01no304_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTGTTTNNNNNNGGCATTGGGCGCTAAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCAGCAATCTATTTTGAACCGTAATAAGACAGAGCTCATA
TTCTGTCAAAATGACAATGTCCTTTCACTGCCTATTTTCCAGTTTCTTTT
GCCTGATATGTCTTTCCAGGAATTGCTTTAGATTACTGTGGAGAATAGAT
GTAGATTTTTAATGTTATGCCCATGGCTGAGGGCTTGGCATTACGGAGAT
CTCCAATATCCTTTTTTTATTATTTTTAATTTTCGTCTTCTATGGATATT
TGTCATTTCTTACTTTTTTGTAATCCCTAGGCCACTAGGCTGTGATTTTC
ACTTCAAAGAGTAAAAACAACAGTGTGATTTGATTGTACATTTACTATCA
TTCTTTATCAATTTTTATGACTACAAAAATATACTTATGTTTGCAAAGTA
ACTCATTTATTCAATATTGATTTATTAAGCATCATTATATACCAAATGCT
GGTCCAAGATCTGAAGACTAACAACGAATAAAACATAAATCCCTTGGCCA
TGAGGAACATAAGTTTTAGTGAGGTAGGCTGTAGACAAATGGATATTTAT
TTCTAAAATTTAAGATAGATATGGTGTAAAAATAGTCCTGAGAAGATGAC
ACTCAAAGAAAGATCTGACTTAAGGGAAGTCAAAGCCACAGAGATATCAA
GAAATTATCCTCTCGGGTTGAAGGGAAGGAAGGTGAGGACAGCAAGAAGC
AAGACCTTGAGATGAGGTTCTGACAGAAAAATGTGTGTTTGAGGCCCAGC
AGGGAATGGGTGTGGTTAGAATGTGGTGGCTCCAAAAAGAAGGTGTGGGG
TGAATGGAAAGAGGCTTCCAGAGACTATAACCCCAGCAGGTCCTTCTGAG
TGAGATTCCAAGACACCATGCTCACCCTAAAGACAAGAAAAGATTGTGTG
GTATGACCTGTTCTCTCTTTCCCCAAAATTAGTTGTTATATTAACGAGAT
GTTTGGGAAATGACTATTATCCCCTAATGGTGTATTGTTTTACAATGCTA
TCTCATGTGTCATGTCCTTCTCCCTATTTTTTATAATAACCACTCTTTCT
TCTTTTCTCTCATTTAATTCTGATTATATTTTTTCTATACTGTTTGATTT
AGCTTTCTTCTCTTTATATCTTTCTAATCTTTGATATATATTATAATACC
CACTCATTTCATACTACGCCTATAATCTTTTATAATATTTTCAAACTCCN
TTTATACTAATCACTCATTCTCTAACTNGATTACGTAATNCCCATTTCTT
ACTTACTTTCGATCTTAGTATAATACCATCA
NNNCCGGTTCTNNNNNNATGATGGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTATTGCCCTACAGGCT
GGTGTCAAACTTAGCAGGAATCCTTTTGCCTCTACCTGGGTACTATGGTT
GAGGGTCTTAAGGCCATGCCTGGCTTCCTTAATTTAATTAATTAGTTAAT
GAACTAATCTTAATGTGCGTGAATGTTTTGACTTCAAGTATGTTGTTGCA
CCATGCACTTGTAGTTCCTAAAGAGGCCAGAATATTGTGTTGGATCCCCT
TTGAGGCTGTTGTTAGCTGCCATGTGGGCAGTATGATTGAAGCCTGGTTC
TCTAGAAGAAGAGCCAGTGCTCACTATTTATTGATTTATTTATTTATTTA
TTTTAATCTATTTTATTTATTTTATGTATATGAGTACACTGTAGCTGTAC
TGATGGTCGTGAGCTACCATGTGGTTGCTGGGTTGAACTCAGGACCTCTG
GAAGAGCGGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCCCACT
TTTTGTTTTTAAAATATATTTTTAGGCTTATTTATTTTATGTGTGACTCT
GTACCACTCCAGTACCTGAGAGTTACGTATGGTTGTTAGCCAACACATGG
ATGCTGGGAATCGAACCCAGGTCTTCTGCAAGAACAAGTTCTCTTCACTG
TTGAGTCATCTCTCCAGCTCAAGGCTTTCTTACATTGCCCTGAGACAGCA
AAGAAAATTAATAGCATTTTCAGATTACTAGAAGAGGCCAATCAAATTTC
TTTATTATTTTATTTTTTTGGGGAATCTCATTACGACCATCCCTGTACTT
TCCAATCATTTTATTTAATCCCCCTGGGACCCGCCTTATGTAGGGATTTT
CATAAAAAATGACTTGTTGCCCCCCAAAAAGAAGGGTGAGGGTTTTTTTT
GGGGAAACCCCATACCCAACATCCACTCCATAAATATAGAAAAAGGGCCT
GGCGGAACACAATCTAATTTTGTATTTCTCTTAAAAATTCCCCCACACAT
ATATATATTCTATTTTACGGTCTTAATACAAATATAAGACATCTTATGTG
CGTCTATTTCCTCTGTTTGTGATATGGGCTTTGTATATATTTATATCCTC
GTAAAATAACATATAAATAACCATATTTCTTGAATATTAATCATAATTAT
CATTGTATCGTATTTCCTTACCTCCGTTTANTCGCCTAATTCATTTCTCT
ATTGACCATATATTATTTATATAATCTCTTCTATTTCTAAATTATGATTA
ATNTANNNNNNNACATCTCCNTTTCTATTCATCTCTATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_c08.b1 MSMg01no304_c08.b1 CHROMAT_FILE:
MSMg01no304_c08.b1 PHD_FILE: MSMg01no304_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:23 2005
         (654 letters)



>mm_chr18_66761687_66762740
          Length = 1054

 Score = 1180 bits (610), Expect = 0.0
 Identities = 643/654 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcatattctgtcaaaatgacaatgtcctttcactgcctattttccagtttcttttgcc 60
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 750 gctcatattctgtcaaaatgacaatgtccaatcactgcctattttccagtttcttttgcc 691

                                                                       
Query: 61  tgatatgtctttccaggaattgctttagattactgtggagaatagatgtagatttttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgatatgtctttccaggaattgctttagattactgtggagaatagatgtagatttttaat 631

                                                                       
Query: 121 gttatgcccatggctgagggcttggcattacggagatctccaatatcctttttttattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gttatgcccatggctgagggcttggcattacggagatctccaatatcctttttttattat 571

                                                                       
Query: 181 ttttaattttcgtcttctatggatatttgtcatttcttacttttttgtaatccctaggcc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttttaattttcgccttctatggatatttgtcatttcttacttttttgtaatccctaggcc 511

                                                                       
Query: 241 actaggctgtgattttcacttcaaagagtaaaaacaacagtgtgatttgattgtacattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 actaggctgtgattttcacttcaaagagtaaaaacaacagtgtgatttgattgtacattt 451

                                                                       
Query: 301 actatcattctttatcaatttttatgactacaaaaatatacttatgtttgcaaagtaact 360
           ||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 450 actatcattctttatcaaaatttatgactacaaaaatatacttatgtttacaaagtaact 391

                                                                       
Query: 361 catttattcaatattgatttattaagcatcattatataccaaatgctggtccaagatctg 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cgtttattcaatattgatttattaagcatcattatataccaaatgctggtccaagatctg 331

                                                                       
Query: 421 aagactaacaacgaataaaacataaatcccttggccatgaggaacataagttttagtgag 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aagactaacaatgaataaaacataaatcccttggccatgaggaacataagttttagtgag 271

                                                                       
Query: 481 gtaggctgtagacaaatggatatttatttctaaaatttaagatagatatggtgtaaaaat 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 270 gtaggctgtagacaaatggatatttatttctaaaatttaagatagatatggtgtaacaat 211

                                                                       
Query: 541 agtcctgagaagatgacactcaaagaaagatctgacttaagggaagtcaaagccacagag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 agtcctgagaagatgacactcaaagaaagatctgacttaagggaagtcaaagccacagag 151

                                                                 
Query: 601 atatcaagaaattatcctctcgggttgaagggaaggaaggtgaggacagcaaga 654
           ||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 150 atatcgagaaattatcctctcgggatgaagggaaggaaggtgaggacagcaaga 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)