BAC Information

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BAC

Clone NameMSMg01-304G07
Chromosome18 (Build37)
Map Location 73,084,170 - 73,256,626
singlet/doubletdoublet
Overlap genenone
Upstream geneDcc, LOC629684, LOC100043411
Downstream geneLOC100042955, Rkhd2, Smad4, Elac1, Me2, Mro, Mapk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304G07.T7 (MSMg01no304_g07.b1)MSMg01-304G07.TJ (MSMg01no304_g07.g1)
ACCAG429689AG429690
length1,2921,353
length of high quality
(start - end)		712 (92 - 803)787 (116 - 902)
definitionCHROMAT_FILE: MSMg01no304_g07.b1 PHD_FILE: MSMg01no304_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:58 2005CHROMAT_FILE: MSMg01no304_g07.g1 PHD_FILE: MSMg01no304_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,255,918 - 73,256,626)(73,084,170 - 73,084,956)
sequence
NCCCGCTTCATTGNNNNNCCATTGCGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTAATTTACAGCTTATTCTTTAAAGGTTTGTCTTTC
AGACACAATTTAGCCCAGACAGCCTGAGATAAAATGAAGAAAGAAACGAC
TGGGGTGATAGCCTTTCCTTTTCCTGTGTCGAGTTGATGACTTACTTGCA
CCAGTGTCTCACTAGTCTTTAAGGGCTCAGGAATAAGAGGGCAGGAGGTG
GGTGTTGATAGGTTCATTTGTATATCCGCAGTCACATCTCTATTGTTTGA
GTGCTACCCACAGAGGAGCAGGTGCTCCCTCTCATTGGTATTCTGTGCTC
CAGTGTACACAGAAAGAAATAAAATAATACACGCAAAGGGCCTCATTATT
CAACAGTCACCCTTGTGAGCTGTACACTGTACATACAGACCCCATTCTAT
CTCTAAAATGCTGACATTATTTTCATCTGCCAGCAGAAGCCACCAAGATT
CCTAAAAGCTGGGGAATGGTCAGCACTGGTGAACTGCAGATTGGCGACCG
GAGGTCCGCTAGGTTTCAGACTCTTTATAGCTGACCTTATGCTAAGACTT
TCCCTCTTTCTCTGATCCTCAGTCTAGCTTGAGTCCCAAGTGGCTTCAGG
TTCTTTTAGATACCCTAGCATTTTTTTAGAAGTCTCCAAATTTCATTTTC
CTGCCCATTGCTTCTTCCCCTTCTCTGGAGACACTTTTTATAAATTGCAA
ATTTATGTTGCTTGTCCTTGACCCGTAAGGGTGTTCCATATTGTTGGTGA
CAAGAAGCAGTGTGAAGAATGAGTTGCACAATAAAATCTTANAGGAATGG
GAAGGGGGAGGGGTATAAAAACACAGCTTTCTCCACCTCTGTTGTATTCA
AAGTGGATCTAATTGGGAAATTTCTTCTTTGAAAAAAAATTTTAGGAACT
TTATTCTTCATTACATCCGGTCCTGTTTTTTTTATTATATATTTGTCAGA
TGCACATTTCTTCATTATCTATACTCTCATTTTTTTTAATTATCTTACTC
AATCTATAAATCCAACATCCATCATACATTACTTCTTTTTTACTTACCAT
TTTTTTACTCGTCTATATTTTTCTTATATCATCATATCTTATATCTATCA
TCTATATTCTTTCTTAACTTACCTTATCATATAATATTAACTTCATCAAT
TGTTATAACTAATTATTTTATCTTTTACTCCTCTTTTCTTATCATACACG
ATATATTATCATTAACTACTAATTATACTGATCCATTCTTCT

TCTTTTNNNNAAGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTTTACTGTTCCAAAATACTCCAGTGAG
TTGCCTATATTCGTAATGGGGATAATTCGTACTTCTCCTTCTCCCAGAAA
CTTCATATTTTAGAATACTAAACCTCAAAACAGCCAAAAATGACCTTTCC
CCCAAAATAAGCTAAACACACCACAACACTGGCACAGTCCTCTCTATGGG
CTGTAAACAGTTGTTAGGTATTACAAGAGCTCAGATGTCTCAACTCAGTA
AAACTCAAGATAAATTCAGATGGTGACATTTTCCTCTGTGATTCTTTTAT
TTCTGTACCCATTTAAGTGATTTCCAGAGCCTGCTAAATGTCATCTAAGT
TACCTAAAGCTTGAGGAACTATTTTGCAGAGATTTTTTTAAATGCAATTA
TACCTCTATTTGACAATACCATCTGCTTCTAGCCTTTCTCACTCTGTCAG
CTTCTGGTTTAGTTAACTCCTTTATGGCTGCAATTGTCTGACTGCTGATA
TAGTTTTTACGGTACAAACAGGTGAGGTCATTAAATGAAGAAAAACAAGT
ATAAGTATTCCCCAGTAAACATCAAACTTACCAAGGAATTCAATTATAAT
AAGTCCAATATTTCTGTTTCTAGTATAAGAAACTACTAATGCAGGCATTA
ATCTATCATAATCACTACTGCATAATGGTAGGAAGTTGATATTGATATTA
GAAGGCCTAAATGAAGTACTCTTTATTTCTGAGCAAGTTAATTAAAAGAA
AAACTCTTTCACATGTGTCTAAACAGTTGTGAAAAATGCAGATAACCAGA
GCCTCCAAAGAGAGTAACTTATAAGTTCACCACAATGAGAAAACATACTT
ATTTGTGTCCAAACACTTCTTTCAGACAAAGAATTTCTGGGTCCTCATCC
ATTGAGTGTGGTAAGGGCTGGAAATCAAAAACTATATATTCTGAGGCCAT
AATGAAAGACGGTTGGAACATGATAAATTTACTAATTAGAAGCCTAAGTT
TTTTTAAACTTTTATTTTTTCTGGGGGCCTCCTGGCCCCCCAAGGGGGGG
AAGAAGGGGGGGGGAAGAAAAAAGGGCCACCTAACTCTAGTGAATATAAG
AAATTATATGAGCTAATTCCTTTAATTTGGGGCTGAGAACTTTAATTCGA
TAGTTTGAATGTATTTTATGAATTATTCTACCTCTTTTTTTTCTAATATT
AACTAAAACTTTATCTCGTATAATTAAATATGCTCTACAATCAAATTATT
TCTGTATTAATATTAAGTTTTTTATTATACTCTTANCNATTTTAATTACT
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_g07.b1 MSMg01no304_g07.b1 CHROMAT_FILE:
MSMg01no304_g07.b1 PHD_FILE: MSMg01no304_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:58 2005
         (712 letters)



>mm_chr18_73255718_73256829
          Length = 1112

 Score = 1317 bits (681), Expect = 0.0
 Identities = 702/709 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtctttcagacacaatttagcccagacagcctgagataaaatgaagaaagaaacgact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 909 ttgtctttcagacacaatttagcccagacagcctgagataaaatgaagaaaggaacgact 850

                                                                       
Query: 61  ggggtgatagcctttccttttcctgtgtcgagttgatgacttacttgcaccagtgtctca 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 849 ggggtgatagcctttccttttcctgtgtagagttgatgacttacttgcaccagtgtctca 790

                                                                       
Query: 121 ctagtctttaagggctcaggaataagagggcaggaggtgggtgttgataggttcatttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 789 ctagtctttaagggctcaggaataagagggcaggaggtgggtgttgataggttcatttgc 730

                                                                       
Query: 181 atatccgcagtcacatctctattgtttgagtgctacccacagaggagcaggtgctccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 atatccgcagtcacatctctattgtttgagtgctacccacagaggagcaggtgctccctc 670

                                                                       
Query: 241 tcattggtattctgtgctccagtgtacacagaaagaaataaaataatacacgcaaagggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tcattggtattctgtgctccagtgtacacagaaagaaataaaataatacacgcaaagggc 610

                                                                       
Query: 301 ctcattattcaacagtcacccttgtgagctgtacactgtacatacagaccccattctatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctcattattcaacagtcacccttgtgagctgtacactgtacatacagaccccattctatc 550

                                                                       
Query: 361 tctaaaatgctgacattattttcatctgccagcagaagccaccaagattcctaaaagctg 420
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 549 tctaaaatgctgacattatttccatctgccagcagaagccaccgagattcctaaaagctg 490

                                                                       
Query: 421 gggaatggtcagcactggtgaactgcagattggcgaccggaggtccgctaggtttcagac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gggaatggtcagcactggtgaactgcagattggcgaccggaggtccgctaggtttcagac 430

                                                                       
Query: 481 tctttatagctgaccttatgctaagactttccctctttctctgatcctcagtctagcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctttatagctgaccttatgctaagactttccctctttctctgatcctcagtctagcttg 370

                                                                       
Query: 541 agtcccaagtggcttcaggttcttttagataccctagcatttttttagaagtctccaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 369 agtcccaagtggcttcaggttcttttagataccctagcatttttttagaagtctctaaat 310

                                                                       
Query: 601 ttcattttcctgcccattgcttcttccccttctctggagacactttttataaattgcaaa 660
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttcattttcctgcccattgcctcttccccttctctggagacactttttataaattgcaaa 250

                                                            
Query: 661 tttatgttgcttgtccttgacccgtaagggtgttccatattgttggtga 709
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttatgttgcttgtccttgacccgtaagggtgttccatattgttggtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no304_g07.g1 MSMg01no304_g07.g1 CHROMAT_FILE:
MSMg01no304_g07.g1 PHD_FILE: MSMg01no304_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:58 2005
         (787 letters)



>mm_chr18_73083970_73085156
          Length = 1187

 Score = 1491 bits (771), Expect = 0.0
 Identities = 783/787 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggataattcgtacttctccttctcccagaaacttcatattttagaatactaaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggggataattcgtacttctccttctcccagaaacttcatattttagaatactaaacct 260

                                                                       
Query: 61  caaaacagccaaaaatgacctttcccccaaaataagctaaacacaccacaacactggcac 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 caaaacagccaaaaatgacctttccccctaaataagctaaacacaccacaacactggcac 320

                                                                       
Query: 121 agtcctctctatgggctgtaaacagttgttaggtattacaagagctcagatgtctcaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcctctctatgggctgtaaacagttgttaggtattacaagagctcagatgtctcaact 380

                                                                       
Query: 181 cagtaaaactcaagataaattcagatggtgacattttcctctgtgattcttttatttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtaaaactcaagataaattcagatggtgacattttcctctgtgattcttttatttctg 440

                                                                       
Query: 241 tacccatttaagtgatttccagagcctgctaaatgtcatctaagttacctaaagcttgag 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacccatttaagtgatttccagaacctgctaaatgtcatctaagttacctaaagcttgag 500

                                                                       
Query: 301 gaactattttgcagagatttttttaaatgcaattatacctctatttgacaataccatctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaactattttgcagagatttttttaaatgcaattatacctctatttgacaataccatctg 560

                                                                       
Query: 361 cttctagcctttctcactctgtcagcttctggtttagttaactcctttatggctgcaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttctagcctttctcactctgtcagcttctggtttagttaactcctttatggctgcaatt 620

                                                                       
Query: 421 gtctgactgctgatatagtttttacggtacaaacaggtgaggtcattaaatgaagaaaaa 480
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 gtctgactgctgatatcgtttttacggtacaaacaggtgaggttattaaatgaagaaaaa 680

                                                                       
Query: 481 caagtataagtattccccagtaaacatcaaacttaccaaggaattcaattataataagtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caagtataagtattccccagtaaacatcaaacttaccaaggaattcaattataataagtc 740

                                                                       
Query: 541 caatatttctgtttctagtataagaaactactaatgcaggcattaatctatcataatcac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caatatttctgtttctagtataagaaactactaatgcaggcattaatctatcataatcac 800

                                                                       
Query: 601 tactgcataatggtaggaagttgatattgatattagaaggcctaaatgaagtactcttta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tactgcataatggtaggaagttgatattgatattagaaggcctaaatgaagtactcttta 860

                                                                       
Query: 661 tttctgagcaagttaattaaaagaaaaactctttcacatgtgtctaaacagttgtgaaaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tttctgagcaagttaattaaaagaaaaactctttcacatgtgtctaaacagttgtgaaaa 920

                                                                       
Query: 721 atgcagataaccagagcctccaaagagagtaacttataagttcaccacaatgagaaaaca 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 atgcagataaccagagcctccaaagagagtaacttataagttcaccacaatgagaaaaca 980

                  
Query: 781 tacttat 787
           |||||||
Sbjct: 981 tacttat 987


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 787
Length of database: 1187
Length adjustment: 10
Effective length of query: 777
Effective length of database: 1177
Effective search space:   914529
Effective search space used:   914529
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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