Query= MSMg01no304_p12.b1 MSMg01no304_p12.b1 CHROMAT_FILE:
MSMg01no304_p12.b1 PHD_FILE: MSMg01no304_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:18 2005
(760 letters)
>mm_chr18_72141273_72142433
Length = 1161
Score = 1402 bits (725), Expect = 0.0
Identities = 749/757 (98%), Gaps = 1/757 (0%)
Strand = Plus / Plus
Query: 1 aaatgagtagccttcagaataagctcaatgctatatttgaagacaaattgtattatatga 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 aaatgagtagccttcagaataagctcaatggtatatttgaagacaaattgtattatatga 260
Query: 61 ctcaagataaagtgttatttaagaattaaaaaccatcttcatgtacataagacttgtctt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaagataaagtgttatctaagaattaaaaaccatcttcatgtacataagacttgtctt 320
Query: 121 atcaacttcaatgctttgttgatagttttagcacaatcttttatacaaggagcgaaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaacttcaatgctttgttgatagttttagcacaatcttttatacaaggagcgaaaaga 380
Query: 181 acagtaaccccctactgtcctgggaaacacagagtttgctcatcacaacattatttttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtaaccccctactgtcctgggaaacacagagtttgctcatcacaacattatttttag 440
Query: 241 aattttgtgagcttgaatggataacagaaggagcagcccaacattaaattattcacttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattttgtgagcttgaatggataacagaaggagcagcccaacattaaattattcacttga 500
Query: 301 atggctttccaaattgaaatcccaaagattgcaagtacagagttgtaactacacaggaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggctttccaaattgaaatcccaaagattgcaagtacagagttgtaactacacaggaac 560
Query: 361 ccatttgaaataatttcagatctgaacattgccatacggttctgttgattttgacagggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatttgaaataatttcagatctgaacattgccatacggttctgttgattttgacagggg 620
Query: 421 caacctactcatgtggataatactatagagggaaagccatggttctgaggccttctgcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caacctactcatgtggataatactatagagggaaagccatggttctgaggccttctgcca 680
Query: 481 agccaccc-taagctcaaactcaccctcacaggatggctctgtattcttttgggattatg 539
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 agccacccctaagctcaaactcaccctcccaggatggctctgtattcttttgggattata 740
Query: 540 cattactctaggaacaggggaatccccagttgcatagcagttgtggacaggtaataaggc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cattactctaggaacaggggaatccccagttgcatagcagttgtggacaggtaataaggc 800
Query: 600 ctttgggagttctatggcattcatctgtatgtttctgccaggaaagggaacgaattttct 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttttgggagttctatggcattcatctgtatgtttctgccaggaaagggaacgaattttct 860
Query: 660 ttagtcaattgctcaaaaatctctcagtcaatggcacaggcaaaaagaagaagctgtgta 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttagtcaattgctcaaaaatctctcagtcaatggcacaggcaaaaagaagaagctgtgta 920
Query: 720 cattaaacttctgtggataaaggcccatgcatgtgta 756
|||||||||||||| |||||||||||||||||||||
Sbjct: 921 cattaaacttctgtctataaaggcccatgcatgtgta 957
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 1161
Length adjustment: 10
Effective length of query: 750
Effective length of database: 1151
Effective search space: 863250
Effective search space used: 863250
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no304_p12.g1 MSMg01no304_p12.g1 CHROMAT_FILE:
MSMg01no304_p12.g1 PHD_FILE: MSMg01no304_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:18 2005
(735 letters)
>mm_chr18_72220197_72221331
Length = 1135
Score = 768 bits (397), Expect = 0.0
Identities = 507/573 (88%), Gaps = 52/573 (9%)
Strand = Plus / Minus
Query: 213 ataaaactgaactgaattagaagaacaataac-------aaaatagaactgacatgctta 265
||||||||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct: 1135 ataaaactgaactaaattagaagaacaataacataaaataaaatagaaccaacatgctta 1076
Query: 266 aacaaaacgactcct------ttcttcttcttctctct-------t-ttttttaacatat 311
||||||||||||||| ||||||||||||||||| | |||||| ||||||
Sbjct: 1075 aacaaaacgactcctttcttcttcttcttcttctctctctctctctctttttt-acatat 1017
Query: 312 aactgagttgtccacattttccaatagcataaaaattatatcttcatcccatc------- 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 aactgagttgtccacattttccaatagcataaaaattatatcttcatcccatctcattaa 957
Query: 365 ---------------------tttcttctgtatttttacagagtgcttccttcttgactc 403
|||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tagttgtgtccagtgggaatttttcttctgtatttttacagagtgcttccttcttgactc 897
Query: 404 atattttattctgaatatgaacgtaatcaatgaacacttggccttgcttttcctggtttc 463
||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 896 atagtttattctgaatatgaacataatcaatgaacacttggccttgtttttcctggtttc 837
Query: 464 tctactaattcttggttagacacagtttgcttccatacaaagaccatggcaggcttcagg 523
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 836 tctactaattcttggttagacacagtttgcctccatacaaagaccaccgcaggcttcagg 777
Query: 524 ttcttttctctcaaatcccaaactgatatactgggtacaaatctaccattctgcaagcaa 583
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ttcttttatctcaaatcccaaactgatatactgggtacaaatctaccattctgcaagcaa 717
Query: 584 ttcttgttccttttcttctcaatatttttaactt-aaaaactatatgaattttaagaatg 642
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 716 ttcttgttccctttcttctcaatatttttaacttgaaaaa-tatatgaattttaagaatg 658
Query: 643 ctctttagggaacgcttccctcagactattttcttttgaggaaaaagatggttaatagtg 702
||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 657 ctctttagggaacacttccctcagactattttcctttgaggaaaaagatggtaaatagtg 598
Query: 703 ggaactaaaaatgactagttagccaacttgctc 735
|||||||||||||||||||||||||||||||||
Sbjct: 597 ggaactaaaaatgactagttagccaacttgctc 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space: 815625
Effective search space used: 815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
