Query= MSMg01no306_d20.b1 MSMg01no306_d20.b1 CHROMAT_FILE:
MSMg01no306_d20.b1 PHD_FILE: MSMg01no306_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:58 2005
(714 letters)
>mm_chr18_58674136_58675249
Length = 1114
Score = 837 bits (433), Expect = 0.0
Identities = 445/451 (98%), Gaps = 4/451 (0%)
Strand = Plus / Minus
Query: 5 gaattcttaccatttcgcctgtcagcaggaacacaagcccgacttttctaagcatgtcac 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaattcttaccattttgcctgtcagcaggaacacaagcccgacttttctaagcatgtcac 392
Query: 65 atctccagtaagatttttgtcccacattttgtgacttgtgcacctcatggtcctaagcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atctccagtaagatttttgtcccacattttgtgacttgtgcacctcatggtcctaagcag 332
Query: 125 attggaagggttgcctcctcctattaaccttgcagaagcagttgtcagtctcttgagttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attggaagggttgcctcctcctattaaccttgcagaagcagttgtcagtctcttgagttg 272
Query: 185 acacgtttgaggacattggcagacatgtcacacggactgagaaagaatgtagaataattt 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 acaagtttgaggacattggcagacatgtcacacggactgagaaagaatgtagaataattt 212
Query: 245 gaaaggt----tttgtttgtttgtttgtttgtttaatccaccacaatgctaaatgacgaa 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaaaggttttgtttgtttgtttgtttgtttgtttaatccaccacaatgctaaatgacgaa 152
Query: 301 gaccagagtaaatgttccttaaaaactaaaaataccactatgggtagatactttatgcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gaccagagtaaatgttccttaaaaactaaaaataccactatgggtagatactttatgcct 92
Query: 361 ttcctggttgccttccagaagaactccaggtcaacatatcatacaggtgcttgcatataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ttcctggttgccttccagaagaactccaggtcaacatatcatacaggtgcttgcatataa 32
Query: 421 atatttattgcttcaccattcacaacagcta 451
|||||||||||||||||||||||||||||||
Sbjct: 31 atatttattgcttcaccattcacaacagcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space: 777216
Effective search space used: 777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no306_d20.g1 MSMg01no306_d20.g1 CHROMAT_FILE:
MSMg01no306_d20.g1 PHD_FILE: MSMg01no306_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:58 2005
(686 letters)
>mm_chr18_58624345_58625430
Length = 1086
Score = 1243 bits (643), Expect = 0.0
Identities = 676/687 (98%), Gaps = 1/687 (0%)
Strand = Plus / Plus
Query: 1 agacagctatctctggttatggtgctgagtgtgatacaacattaccggttgtcacggtaa 60
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 200 agacagctatctctagttatggtgctgaatgtgatacaacattaccggttgtcacggtaa 259
Query: 61 caa-cccaaatacatctagactagcctaagaactggcagctgccttactcctacttccaa 119
||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 260 caaccccaaatacaactagactagcctaagaactggcggctgccttactcctacttccaa 319
Query: 120 cctgggttccaccagagaaccctaagtacacacgcacatgcacacacacacacatgcatc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 320 cctgggttccaccagagaaccctaagtacacacgcacatgcacacacacacacatgcacc 379
Query: 180 aacatccacatggtgtatactgcttcttcataacttatttgtggctgtccacaccttcag 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aacatccacatggtgtatgctgcttcttcataacttatttgtggctgtccacaccttcag 439
Query: 240 tccttgttgaggcacacttcagtctttcctcttctcacgacaaagctttcccactctttg 299
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 tctttgttgaggcacacttcagtcattcctcttctcacgacaaagctttcccactctttg 499
Query: 300 cctgcctctgtatgtttgctaagcagaagtgatggggctgactcccttgctatagcacgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctgcctctgtatgtttgctaagcagaagtgatggggctgactcccttgctatagcacgc 559
Query: 360 tctaaataaataccctttcttctttttcatctgggtggtctccatttggtttccaaagtg 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctaaataaatacccttccttctttttcatctgggtggtctccatttggtttccaaagtg 619
Query: 420 ttattcttctgagtgcttgtgtctgtattttccattatgttgggagcttgaagacacagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttattcttctgagtgcttgtgtctgtattttccattatgttgggagcttgaagacacagc 679
Query: 480 tctttatttatcccatgttttctctttctgagtataacctactgcactttttcatattga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctttatttatcccatgttttctctttctgagtataacctactgcactttttcatattga 739
Query: 540 aaatatttgttgactagatttctctggaatttaacttgcttccatgtccaggtgctgttt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaatatttgttgactagatttctctggaatttaacttgcttccatgtccaggtgctgttt 799
Query: 600 ggaaatgcctcttttttagcagctatttacagctcaataaattatgtaggaaagacttgt 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 800 ggaaatgcctcttttttagcagctatttgcagctcaataaattatgtaggaaagacttgt 859
Query: 660 tgctttgtgtgcagaggtgacgatgac 686
|||||||||||||||||||||||||||
Sbjct: 860 tgctttgtgtgcagaggtgacgatgac 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
