BAC Information

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BAC

Clone NameMSMg01-306L01
Chromosome18 (Build37)
Map Location 81,595,166 - 81,595,455
singlet/doubletsinglet
Overlap genenone
Upstream geneCtdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
Downstream geneLOC100039458, LOC100040871, B020010K11Rik, Galr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306L01.T7 (MSMg01no306_l01.b1)MSMg01-306L01.TJ (MSMg01no306_l01.g1)
ACCAG431279AG431280
length734730
length of high quality
(start - end)
290 (78 - 367)520 (73 - 592)
definitionCHROMAT_FILE: MSMg01no306_l01.b1 PHD_FILE: MSMg01no306_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:33 2005CHROMAT_FILE: MSMg01no306_l01.g1 PHD_FILE: MSMg01no306_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCACCGGCATGCCTAGAGACCCTCAGCGTGCCTCTTCATTTGT
GTTATACCGCTGCACATCTGCTTGTGCCCTTCTGAGAGACTGTATTTAAA
GCATAAAGGTTTGGTATGAAGGGAAATAATTAACATGTTCCTCGGCACCT
GGCCCGCGGGGACACGGCAGGCAGTACCTGCAAATGACAAAGTCCCTTCA
TATCTCATGTTTCCAGAAGTGAGTCCCGGCCCGATTCAGAACAATCTGGG
TGATATGCCCTTCCCTGGAAGATAGGGTGGAGATGCGCGGGTGTACTGTG
GCTCACAGAGCCTTTCTCTTTGGCGCCCCCCCCCCCAGCTCTGTTCTCAA
GCTGACAGTGACTGGGCATTCCTTTCGTTTCTTAAAAACAGTGCGCCGTC
TCTTTAATGAGACACTGAAGACCTTCCAGTCCGGAAGCATCCATCTGTGA
AACGGCTCACACAAGAGTCCAGACCACCGACTAAAACCATTTCCCACATT
CCTCAGTGCCAGTGTCTAGCCTTCAGTCCTATTGGAAAAGACATTTCTAG
ATTTATCAGATTTGCATTTTCTTTGATTAAGCACAGGGAAATTGCCTCCC
CACCCCCTTGAGCCCCAGACCTCTCAAAATGGAGTAGGAACACATGGTGT
GAAAAAGAGTTCCTCCACTCCCTCCCCCTGATTA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACCCCATTTAAAA
AAATTGGGTTATTTGTTTTTTTTTTTTTAAAGTCAAACTTCTTGAGTTCC
TTGTGTAGTGTGGCTATTAGACCTCTATATAATGTAGAGTCAGTGAAGAT
TTTTTTCCCAATCTGTAGGTTGATGCTTTGTTTTACTGACAGTGTCCTTT
GCCTTACAGAAGATTTTCAGTTTCATGAGGTCCCATCTGCCAATTGTTGA
TCTTAGAGCCTGCACCATTGGAGTTCTGTTCAGAAAAATTTTCCTTGTGC
CAATGTGTTCAAGGTTATTTCCCACTTTCTCTTCTATTAGATTCAGTAGT
GGGGACCTGCAACCTGAAGAGACCACCTCCAGCAGATAGACATGGCCCCA
GTGGAGGGATAGGGCCACCCACCCATGTTCAAAAATTTTGACCCAGAATT
ATTCCTGTCTAAAGGAAATACAGAGACAAAAATGGAACAGCGACTAAAAT
GGCCATTGAGTGACTGCTCCAACTTGGTATCCATCCCATGCTTAGGCTTC
AAACCTGACACTATTACTGATGCTATGCTGTGCTTTCAGACAGGAGCCTA
GCATGGCCGTCCTCTGAGAGGCTGTACCACCAGCTGACTGAGACAGATGC
GGATGCTTTCAGCCAAACATTGGACTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_l01.b1 MSMg01no306_l01.b1 CHROMAT_FILE:
MSMg01no306_l01.b1 PHD_FILE: MSMg01no306_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:33 2005
         (290 letters)



>mm_chr18_81594966_81595655
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcagcgtgcctcttcatttgtgttataccgctgcacatctgcttgtgcccttctgaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 490 cctcagcgtgcctcttcatttgtgttataccgctgcacatctgcttgtgggtttctgaga 431

                                                                       
Query: 61  gactgtatttaaagcataaaggtttggtatgaagggaaataattaacatgttcctcggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gactgtatttaaagcataaaggtttggtatgaagggaaataattaacatgttcctcggca 371

                                                                       
Query: 121 cctggcccgcggggacacggcaggcagtacctgcaaatgacaaagtcccttcatatctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cctggcccgcggggacacggcaggcagtacctgcaaatgacaaagtcccttcatatctca 311

                                                                       
Query: 181 tgtttccagaagtgagtcccggcccgattcagaacaatctgggtgatatgcccttccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgtttccagaagtgagtcccggcccgattcagaacaatctgggtgatatgcccttccctg 251

                                                             
Query: 241 gaagatagggtggagatgcgcgggtgtactgtggctcacagagcctttct 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gaagatagggtggagatgcgcgggtgtactgtggctcacagagcctttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)