Query= MSMg01no307_k01.b1 MSMg01no307_k01.b1 CHROMAT_FILE:
MSMg01no307_k01.b1 PHD_FILE: MSMg01no307_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:44 2005
(401 letters)
>mm_chr18_22499100_22499900
Length = 801
Score = 708 bits (366), Expect = 0.0
Identities = 390/398 (97%)
Strand = Plus / Plus
Query: 4 caaactcagaaatccacctgcctctgcctcccaactcctaagtgctgggattaaaggcgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 caaactcagaaatccacctgcctctgcctcccaactcctaagtgctgggattaaaggcgt 263
Query: 64 gtgccaccactccccggctggccccaactttttaagtttacctttgtttgatgttgtgct 123
| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 gcgccaccactgcccggctggccccaacttttaaagtttacctttgtttgatgttgtgct 323
Query: 124 ctcctatgacctttggccattttttccagcgtactattatctctaccttcctgtagataa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcctatgacctttggccattttttccagcgtactattatctctaccttcctgtagataa 383
Query: 184 atgaatagttattataacttatttgatactcactggacaatcactgttaaatgtgttgca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgaatagttattataacttatttgatactcactggacaatcactgttaaatgtgttgca 443
Query: 244 atatttttacttacatgtatgtgtgtgtctatgcgagtgtatatatgccatgtctttggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atatttttacttacatgtatgtgtgtgtctatgcgagtgtatatatgccatgtctttggg 503
Query: 304 tatccacagaggccagacaggacatgggatttcctagagccccaccaacaggtaattgta 363
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 504 tatccacagaggccagacaggacatgggatttcctagagctagagtaacaggtaattgta 563
Query: 364 tgtagcttgacttgggtgttgttctataggaatgaaaa 401
||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtagcttgacttgggtgttgttctataggaatgaaaa 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_k01.g1 MSMg01no307_k01.g1 CHROMAT_FILE:
MSMg01no307_k01.g1 PHD_FILE: MSMg01no307_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:44 2005
(523 letters)
>mm_chr18_22611168_22612090
Length = 923
Score = 538 bits (278), Expect = e-157
Identities = 322/340 (94%), Gaps = 8/340 (2%)
Strand = Plus / Minus
Query: 1 aacagttcacagctgacacagtgacaggaggtaatttagaagagcaggcccgcgctgcat 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aacagttcacagctgacacagtgacaggaggtaatttagaagagcaggccagcgctgcat 382
Query: 61 ggaggtgagaggaatattgcaggaacacaaacactcataaaggattctgggctttgcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaggtgagaggaatattgcaggaacacaaacactcataaaggattctgggctttgcagc 322
Query: 121 aagtgctgaaaagcaaactcacacacagagaaaaactgctttcgatggtgttaagcacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgctgaaaagcaaactcacacacagagaaaaactgctttcgatggtgttaagcacca 262
Query: 181 gcatgtggtccagaactcaagttcaacatttaaggaaaagctaaagcaaggacaacaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatgtggtccagaactcaagttcaacatttaaggaaaagctaaagcaaggacaacaaac 202
Query: 241 ccatcatcaccatttccagctccagctccagctccagctccagcaccagcaccatc-tcc 299
||||||||| ||||| ||||| ||||| ||||| ||||||||||||||| | | |
Sbjct: 201 ccatcatca------ccagcaccagcaccagcaccagcaccagcaccagcaccagcat-c 149
Query: 300 agcaccagcaccatcaccagcaccagcaccatcaccagca 339
|||| |||||||| ||||||||||||||||| || |||||
Sbjct: 148 agcatcagcaccagcaccagcaccagcaccagcatcagca 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
