BAC Information

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BAC

Clone NameMSMg01-309B10
Chromosome18 (Build37)
Map Location 82,506,404 - 82,506,730
singlet/doubletsinglet
Overlap geneB020010K11Rik
Upstream geneLOC100039458, LOC100040871
Downstream geneGalr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309B10.T7 (MSMg01no309_b10.b1)MSMg01-309B10.TJ (MSMg01no309_b10.g1)
ACCAG432980AG432981
length1,096748
length of high quality
(start - end)
---327 (78 - 404)
definitionCHROMAT_FILE: MSMg01no309_b10.b1 PHD_FILE: MSMg01no309_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:34 2005CHROMAT_FILE: MSMg01no309_b10.g1 PHD_FILE: MSMg01no309_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAAAAACCACTNTNNTTACACCACCTCTCTTACAGCCCCGTTCTTTAT
CCTATTTATTAACCAACATTAAAATATATCCCACCACCCAACACCATAAT
AATCCTCCATCCCCCGCGCAACGACCAAGACACCCACGCCGCACCGCCAC
TAGCCCGTAGCTACCACCCTGCAGTGTCTCCACAATGTTACTCCTTTTCT
ATCTCCTTATTATCTTTTGTTNNNNGGGGTTACTCCTTAAAAAAAAAAAT
TTTGGGCCGGGGGNCCCGGGGTCCTTTAAAATAAAAGGGGAAACTTCCCC
AACTTTAAAATAAGAGGGGGCAAAAAAAAGAGTATATATCTCCCGCGGCG
GGGGTGAAAACAAATTCCCCCTGTGGGGGGTTTGTCCAGAGAGTCTTTCC
GTGAGAAAAGAACCCCCCCACCAAAATTTGTTGGGGGTTAAAAAAAAAGT
GGCGGGAGGGCGGATACTAAAATAAAATTGTGAAGGAAGAATATTTCTTT
CTTTGTGGAAGAAAAAAAATAACCCCTCCACAAACAGCCATTTGTATTTC
TGCTTGGAGGGAGAAAGAAAAACCCACCCCTATTATAAATAATACAAAAA
AAAAGCTGCCGCCGGTGGATGATTAAAAAAAAATCAAAGAAAGTGTCTCT
CCCCCTCAACTAAACAAGCGGGGGAGGAAGATATTTCAGAGGAGAGAAAC
ATAGAGCGCGCACAATAAATAGAAAAGAAATTTCCTCTCTATTTTTCCCC
CACCCTAACACTAGTTGGGGATGGGTGGGTGAGGAGAAAAAAACCCGCCC
CATATTATTTTGATTGCGCCTGCCCACACAACAAATAAGAGTAAAAGGCG
CCGCGCGGGGGTGGTCTTGTATCTTTTTATTTTGAATTTGCGACGCACGT
GGGGAGCGAAAGAAAAACCAATAAACGTACACCGCGTGGTGGGGTTAGTA
AAAGAGGAGAATTATATGAGATATATGAATCACTANTAACCGCCTCTCTT
AATACCGCTATTGGATGGCAAAGCGGCACCAACACCCACTTCTTCTTTAG
ATTAGATTTATATTACGACACAATAGAACAATTCAGTGACACGACN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGATAGCCGGTGGCTATGGTC
AGGAAGGGAAAAGCATGGCGTACTCAGCAATGGTCAGTCTTCTCGCCATG
GGGGCTGAGTCTTCCTTGCCACTGCCTAGAAGTGCCTGCACTGTGGTCTA
CATTTCAGTTAGCTTTTCTGTCACTTAATTGTCCAAATGAGGGTAAGAAA
GATGATAGCTGTCCAGGAAGTCAGCTTCTGCAGTGAGGTGATTTTTGAGG
TTCAACTCCATTAAGTCTCTGGCGCCATCTCCTGAGAGTACATTACGGCC
TCTTGTATGAACTGTCCTTTAAAGACAGTAATTTATTCCTACGTGGTTAA
GAAGAGGTGCCAGTGAGACCACCCCCTTTTGTTGTTTCCCTCTTATCGGT
TCTCCCACCTAAAAGTGATAATTTTGAATATTAACTGTATCCATTTTTAG
GCATAATCCATTTACCAAGTAACTTTAATTTTATTATTGCTCAAAGAAAT
CACTGATTGTCCTCATTTATGTAACATGAATCCCTATGTTTTGTTTATGT
ACAAGGCCCGGTTACAACGGCCACTTCCCTACTTTTTGTAGTTGTGCCTC
ATCTCTGGTCTCTCTTCTTCGTTACTTTATAGGAATCACTTTTACAAATT
ATTCTATCCTTTGCGGAATATTTTCCCACTTTCTTATCTATTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_b10.g1 MSMg01no309_b10.g1 CHROMAT_FILE:
MSMg01no309_b10.g1 PHD_FILE: MSMg01no309_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:35 2005
         (327 letters)



>mm_chr18_82506204_82506930
          Length = 727

 Score =  594 bits (307), Expect = e-174
 Identities = 322/327 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgatagccggtggctatggtcaggaagggaaaagcatggcgtactcagcaatggtcag 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| 
Sbjct: 527 tttgatagccggtggctatggtcaggaagggaaaagcatggcttactcagcaatgatcaa 468

                                                                       
Query: 61  tcttctcgccatgggggctgagtcttccttgccactgcctagaagtgcctgcactgtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcttctcgccatgggggctgagtcttccttgccactgcctagaagtgcctgcactgtggt 408

                                                                       
Query: 121 ctacatttcagttagcttttctgtcacttaattgtccaaatgagggtaagaaagatgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctacatttcagttagcttttctgtcacttaattgtccaaatgagggtaagaaagatgata 348

                                                                       
Query: 181 gctgtccaggaagtcagcttctgcagtgaggtgatttttgaggttcaactccattaagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gctgtccaggaagtcagcttctgcagtgaggtgatttttgaggttcaactccattaagtc 288

                                                                       
Query: 241 tctggcgccatctcctgagagtacattacggcctcttgtatgaactgtcctttaaagaca 300
           |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 287 tctggcgccatcacctgagagtacattacggcctcttgtatgaactatcctttaaagaca 228

                                      
Query: 301 gtaatttattcctacgtggttaagaag 327
           |||||||||||||||||||||||||||
Sbjct: 227 gtaatttattcctacgtggttaagaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)