BAC Information

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BAC

Clone NameMSMg01-309C09
Chromosome18 (Build37)
Map Location 87,544,950 - 87,545,257
singlet/doubletsinglet
Overlap genenone
Upstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
Downstream genePpia-ps18_1039.1, LOC329008, LOC100039961, LOC100039972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309C09.T7 (MSMg01no309_c09.b1)MSMg01-309C09.TJ (MSMg01no309_c09.g1)
ACCAG433022AG433023
length707857
length of high quality
(start - end)
315 (46 - 360)280 (132 - 411)
definitionCHROMAT_FILE: MSMg01no309_c09.b1 PHD_FILE: MSMg01no309_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:39 2005CHROMAT_FILE: MSMg01no309_c09.g1 PHD_FILE: MSMg01no309_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTCACAAATCTACAGCTTTCTGCAATTATAATTACTCATTAGT
AACCCATTTTTAAAAAATAAGTATTAAAGATATCTCCATATTTGTCCTTA
TAGCTGAATATACAAAAATAAATTTTACAAGAATTCCCTCTAATCCTAGA
TTGTAAAAATTTGCAGCCCACTCAATGACCATATTTTTAATTTTATAGGC
CTCTGTAACATTATTATTCATACTTCTGATTTGTTTTGTTTTTTTCTGGT
GATAAGGCTTTTCAACATTTGTTCTTAAGTGAGCAATTATACAACACAGT
TTTAAAAACTTTTTATTTATAACCCCCCTCCACATTGATTCCTAATTGTT
ACTACTCAGACTAATGGGTAATATGTGTAGATTTTTACTATCAACTATGC
TAACCATTTAAAGCATTTTTATGTTTTGAAAGGATTACAAAAGAACTTGG
AAATTTTTTCCCTACACTCACTTCTTGCAGGTTTAAAGTAAATTAATTAA
TAATGAAAGGAGAGGATCCACTACCACCCCCTTCCTGCATTTCACTGTGC
TCCAGCGCTGTTAAATGTCCTCCTACACTGGTACACAGTATAATCTGAAC
AGTTATTATTTTTGAGTCTTACCAGGTGTCACCACACAGAGATGTGCAGT
ATTAAGC
TCTTTCTTCTTCCCCTTTNNNTNCTTACCGTCCTTNCCTCCNCCCNCNNN
NNNCACCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTGCA
CAGAAAAACCCTGTCTCAAAAACAAAAAACAAAAAACAAAACAAAACAAA
ACAAAACTTAAAAACAAACAAACAAAACAAAAACAAAAACAAACAAACAA
AAAACGGAAAGCACTCACCAAGGACAGCCTTTGGTGGTCTTTGGCACTCA
GCTTGGAAACAGTGATACCAAAACTATTAAGGGGAATGCCAGGGCCAGAA
AGTGGGAATGGATGGGTTGGTGAGCAGGGGAATGGGAGAGGGGATAGGGG
TAGCGTTTTNTTNTTTTTTTTTTTTTTTNNTCCCCCCCCCCCCCCTCTTC
TTTTTTTTCCTTCTTCTCTCCTTCCTCCCCCCCTCCCTTTTCCATCCTTC
TTTTCTTCCCTTTTCTCCCTTCCTTCTTTTCTTTCTTTTTCCCCTTCTCC
TTCTTTTTTCNTTTCTCTCTCTTCTCTTTTTTTTTCTCCCCTTTTTTTCT
TTTTTTTTTTTTCCTTCTTTTCTTCTCTTCTTTTTTCTTTTCTTTCCTCT
CCCCCCCTCCTCCCTTCCTCCCCTTTCCTTCCCTCTCTCTCTGTTTTGTT
CTTCTCTCCCCTGCTTTTTCCTTTTTTCCTTCGTGTTTTTTTTTCTTGAT
TCCTGCTTCTTTTGCGTCTTTTTTTTTTTTTCTTCCTCTGCCCGCACTCT
TTTTTTTTCTATTGCTTTCCTCCCTCTAATGCCTCCAAATGAGTTCCCCG
CGTAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_c09.b1 MSMg01no309_c09.b1 CHROMAT_FILE:
MSMg01no309_c09.b1 PHD_FILE: MSMg01no309_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:39 2005
         (315 letters)



>mm_chr18_87544747_87545458
          Length = 712

 Score =  524 bits (271), Expect = e-153
 Identities = 300/311 (96%), Gaps = 3/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttcacaaatctacagctttctgcaattataattactcattagtaacccatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttcacaaatctacagctttctgcaattataattactcattagtaacccatt 263

                                                                       
Query: 64  tttaaaaaataagtattaaagatatctccatatttgtccttatagctgaatatacaaaaa 123
           |  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 taaaaaaaataagtattaaagatatttccatatttgtccttatagctgaatatacaaaaa 323

                                                                       
Query: 124 taaattttacaagaattccctctaatcctagattgtaaaaatttgcagcccactcaatga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaattttacaagaattccctctaatcctagattgtaaaaatttgcagcccactcaatga 383

                                                                       
Query: 184 ccatatttttaattttataggcctctgtaacattattattcatacttctgatttgttttg 243
            |||||||||||||||||||||||||||||||||||    |||||||||| ||| |||||
Sbjct: 384 tcatatttttaattttataggcctctgtaacattatc---catacttctgttttattttg 440

                                                                       
Query: 244 tttttttctggtgataaggcttttcaacatttgttcttaagtgagcaattatacaacaca 303
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttttctggtgataaagcttttcaacatttgttcttaagtgagcaattatacaacaca 500

                      
Query: 304 gttttaaaaac 314
           |||||||||||
Sbjct: 501 gttttaaaaac 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 712
Length adjustment: 9
Effective length of query: 306
Effective length of database: 703
Effective search space:   215118
Effective search space used:   215118
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)