BAC Information

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BAC

Clone NameMSMg01-309H22
Chromosome18 (Build37)
Map Location 19,407,330 - 19,407,644
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658
Downstream geneLOC665624, LOC665629, Dsc3, Dsc2, Dsc1, Dsg1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309H22.T7 (MSMg01no309_h22.b1)MSMg01-309H22.TJ (MSMg01no309_h22.g1)
ACCAG433269AG433270
length742724
length of high quality
(start - end)		322 (49 - 370)570 (77 - 646)
definitionCHROMAT_FILE: MSMg01no309_h22.b1 PHD_FILE: MSMg01no309_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:05 2005CHROMAT_FILE: MSMg01no309_h22.g1 PHD_FILE: MSMg01no309_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATGTGTGCTTTGATCATGTTCATCCCTTCTTCAAACTCCAC
ACATACTCACATGACTGTATCCATACATTGTTTTTATTAATAACTATCAA
GACATAGTTGCATTGCCCAAATGTTCTTCAATGTGAGGTCTTCCACTAAA
GCATTGTCAAATTATTAGATGCCATAGTCTTAGAGAAAATCTGAAACTCC
CCCTCAATCAGCTTTCAATTACCAATACCTCCTCTACATGTGAGGTAGAA
CTTAGTGACTAACTCCCTTCTCCATTCTATTATTTGATTTGACTTGGTCT
TTTGGAATCGTATGTTGTGGTATTTACCCCCACCCCCCCGCAATGGCCTT
TCCTTCAGACTCTGCTCCATTCTCCGCCCTATAAAAAAACAATTTGACAG
GAGGAGTTCGGAGTTATTATTTTTGAAGTGGGTGGGTGGTTCCAACCCTC
AACCAGCGTCCATGTCTATCCACTGGATATGGTCTCTACAGGATCTATCT
CATCATTTGTTAGGTGTTTCAGATAATGTCCTTTCTGCTGAGTCCTGAGA
ACATTCTTGTATCCCTGAGATCTGGGACTTTCTACCGTCTATCCCCTGTT
TTTTCTCCTCCACTGCTATTACCCTTTTCAAACTAATTGTTGATGCTTAT
CACACCTTGATTATTAATTATTCGCTTAACCTCGCCTCTCAT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAAACATAACTTGTAAAGC
CATTTTCCACTTTACTTCTGATAGACTGTCTTGAATTTCCTTAGAAAGTT
CAAGATCAGGCATACCTTGTAAAGCTATTCCCCACTTTACTTCTGATAGA
CTGTCTTGAATTTCCTTAGAAAGTTCAAGATCAGGCATACCTTGTAAAGC
TATTCCCCACTTTACTTCTGATAGACTGTCTTGAATTTCCTTAGAAAGTT
CAAGATCAGACTTATCTTGTAAAGCTATACTTACGGGTTACCGCCGTTCC
CCAGCTGAAAAGTTCTGAATTCACGCAGTTGAATCCTTCTTAACAGTCTG
CTTTACGGGAACCTTTCTTACCGCGACCCGCAGTTCTGGTTCTGGAATGA
GGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGAGTTTCGGC
ACCAATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAAGACGCAACA
AACCAGAATCTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCA
GAGTGCAAGAAGCAAGAGCGAGAGATAACGAAACCCTGTCCCTCTTAAAG
GAGATTATCCTTCGCCTCGGACGTGTCACTCCCTGATTGCCTGCAGCCCA
TCGGCCGAGTTGACGTCACGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_h22.b1 MSMg01no309_h22.b1 CHROMAT_FILE:
MSMg01no309_h22.b1 PHD_FILE: MSMg01no309_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:05 2005
         (322 letters)



>mm_chr18_19407126_19407847
          Length = 722

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgtgtgctttgatcatgttcatcccttcttcaaactccacacatactcacat 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattccatgtgtgctttgatcatgttcatcccttcttcaaactcctcacatactcacat 264

                                                                       
Query: 65  gactgtatccatacattgtttttattaataactatcaagacatagttgcattgcccaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gactgtatccatacattgtttttattaataactatcaagacatagttgcattgcccaaat 324

                                                                       
Query: 125 gttcttcaatgtgaggtcttccactaaagcattgtcaaattattagatgccatagtctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttcttcaatgtgaggtcttccactaaagcattgtcaaattattagatgccatagtctta 384

                                                                       
Query: 185 gagaaaatctgaaactccccctcaatcagctttcaattaccaatacctcctctacatgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaaaatctgaaactccccctcaatcagctttcaattaccaatacctcctctacatgtg 444

                                                                       
Query: 245 aggtagaacttagtgactaactcccttctccattctattatttgatttgacttggtcttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggtagaacttagtgactaactcccttctccattctattatttgatttgacttggtcttt 504

                          
Query: 305 tggaatcgtatgttg 319
           |||||||||||||||
Sbjct: 505 tggaatcgtatgttg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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