Query= MSMg01no311_c07.b1 MSMg01no311_c07.b1 CHROMAT_FILE:
MSMg01no311_c07.b1 PHD_FILE: MSMg01no311_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:55 2005
(651 letters)
>mm_chr18_73205077_73206127
Length = 1051
Score = 758 bits (392), Expect = 0.0
Identities = 497/564 (88%), Gaps = 51/564 (9%)
Strand = Plus / Minus
Query: 5 gaattccttaaccataacatctgctgtagactatgcatgtaaaccacactctgcctagac 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 563 gaattccttaaccataacatctgctgtagactatgcatgcaaaccacactctgcctagac 504
Query: 65 cttggtcctttgggtagactcatctcagtccctctcagctgcaatgggcaccttctatca 124
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 503 cttggtcctttgggtggactcatctcagtccctctcagctgcaataggcaccttctatca 444
Query: 125 cagagctattctacaaatcccttttacctattgcctctctctttcagatgcacttcagac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagagctattctacaaatcccttttacctattgcctctctctttcagatgcacttcagac 384
Query: 185 cttactgtatatgcatcccaccacttctcatgtctcaaaatttaaccattagcccgtttc 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 383 cttactgtatatgcatcccaccacttctcatgtctcacaatttaaccattagcccgtttc 324
Query: 245 tctatgataatatttaattggatctacacactttgcgttataacctcttctggcctaggc 304
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 323 tctatgataatatttaattggatctacacactttgtgttataacctcatctggcctaggc 264
Query: 305 tacccttgtccttttaggttcctagttttaagggcaatgcatcttttaaaccatttataa 364
|| |||| ||||||||||||||||||||||||||| ||||||| |||||||||| ||||
Sbjct: 263 taaccttttccttttaggttcctagttttaagggcgatgcatcatttaaaccatatatat 204
Query: 365 a-------------------------------------aaa-------------agtgcc 374
| ||| | |||
Sbjct: 203 atatatatatatatatatatatatatatatatatatataaacatatatatatata-tgca 145
Query: 375 aaaggatgagtagatttcatgcttgttgtatgaagttgtataattcctcagggcaagata 434
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 144 aaaggatgagtagatttcatgcttgttatatgaagttgtataattcctcagggcaagatg 85
Query: 435 gcgtcccttcatctttggacaaggtgactagtatttgtttattctgattcataacaggtg 494
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 84 gcgtcccttcatctttggacaaggtgactagcatttgtttattctgattcataacaggtg 25
Query: 495 tctggagggcaatatgctgcaaaa 518
||||||||||||||||||||||||
Sbjct: 24 tctggagggcaatatgctgcaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no311_c07.g1 MSMg01no311_c07.g1 CHROMAT_FILE:
MSMg01no311_c07.g1 PHD_FILE: MSMg01no311_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:55 2005
(576 letters)
>mm_chr18_73180619_73181594
Length = 976
Score = 1040 bits (538), Expect = 0.0
Identities = 565/576 (98%), Gaps = 4/576 (0%)
Strand = Plus / Plus
Query: 1 aatatttcttgactcagaaaatccaagataagagaaagggctacttcggtctcacttacc 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 aatatttcttgactcagaaaatccaagataagagaaagtgctacttcggtctcacttacc 260
Query: 61 aatgtgtttctgtatacaacacaatgagaaagagaggaaccatctactttactctgaaga 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtgtctctgtatacaacacaatgagaaagagaggaaccatctactttactctgaaga 320
Query: 121 cacttctagaaggttaattcaccatttccatttactttcattgactatagcttagctata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttctagaaggttaattcaccatttccatttactttcattgactatagcttagctata 380
Query: 181 taagtactctaagcttcagaggaaccttgtaaatctaagattcatagttcgtggccatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtactctaagcttcagaggaaccttgtaaatctaagattcatagttcgtggccatgt 440
Query: 241 gcccaatgaaataaaagagccatgtgctctgcttgttccttgtaactaattagatgaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcccaatgaaataaaagagccatgtgctctgcttgttccttgtaactaattagatgaaaa 500
Query: 301 ctggggaatgtaactgatcattttatgtaaatttcttgtctttttctttattttctttga 360
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ctggggaatgtcactgatcattttatgtaaatttctcatctttttctttattttctttga 560
Query: 361 gctctattcttaatttacacatgcactcattcattcaaacatacatacatacatacactc 420
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct: 561 gctctattcttaatttacgcatgtactcattcattcaaacatacatacataca----ctc 616
Query: 421 atgaaaacatccatgatagagaaaatccttgagtgtctgctactgtgagctctggagtcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atgaaaacatccatgatagagaaaatccttgagtgtctgctactgtgagctctggagtcc 676
Query: 481 ttcccaattcagaattaatttccaaaactgcacccacaacttccagctttctggtaatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttcccaattcagaattaatttccaaaactgcacccacaacttccagctttctggtaatcc 736
Query: 541 taactcatctatctcttttcagtgtctcttacttta 576
||||||||||||||||||||||||||||||||||||
Sbjct: 737 taactcatctatctcttttcagtgtctcttacttta 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
