BAC Information

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BAC

Clone NameMSMg01-311D05
Chromosome18 (Build37)
Map Location 57,643,856 - 57,644,174
singlet/doubletsinglet
Overlap genenone
Upstream geneGramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1
Downstream gene1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311D05.T7 (MSMg01no311_d05.b1)MSMg01-311D05.TJ (MSMg01no311_d05.g1)
ACCAG433770AG433771
length742752
length of high quality
(start - end)
323 (45 - 367)298 (81 - 378)
definitionCHROMAT_FILE: MSMg01no311_d05.b1 PHD_FILE: MSMg01no311_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:59 2005CHROMAT_FILE: MSMg01no311_d05.g1 PHD_FILE: MSMg01no311_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATCCTTGGGCTACTTCACACGGGCGTTAATGAGGGTGTATTGTG
ATTCTTCAAGCCTCTTTCACACTGCATTCAGTGAATGGGCCCTAAAGTCC
CAGCTAGGAATGTCTGGTTGAAAAGTAAAAGGAATTTGGAAATTAGCCCA
AACTTCTCAATTTACAATTTATGGAAGGGAGCCTGAGAGAAGTCGAATGG
TTTTCTTCCTCTGGATTAAGTTCAGGGCCTTGAACATGCGAAGCTTGGGC
TTCACAGCTGAGCTTACTACACACCCAGGTAACAGAAGGGAGCCTCCCAC
TGAATTCCACATAGAATGATTTATCCAGCCCCGCCGCCCTCTGGTGCTTG
TCCTTAGTTGCAATCTCAAGCCCCACCCCCCACAAAAAATAATAAACTTT
GCCGGCAGAGTTTTCCCATGTGTAACCAGAGTCACAGAGTGAGAACCAGG
TGGGAGCGAGGCCAAGCCAATGTGGGCAGAGTCCCCGGTTGCTCCCAGTG
CTGTCTCCCACTGTCCAATTTGAATCCGTGATATTTGATCTGGGCTCTGT
AAGGCACATAAATAGCACTTTGTTGTTCCCTTGCCTTCTGGTACTTGTTG
CAAGCATTAGGTCCTTTGCGCTCCTTGGCAATATCTTTCCTTAGTCTCCC
AACGTTCTCTCTGGAATCTCTGGGCCCACAGTCATCCCTCTT
CAATCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAAAAACAATGCAGCAG
GCAAAAAACAAACAAACAAAAACCAAAAACCAAACCAAAACAAAAAAACA
CTGGGTGAGAAAGAAATCTCCCAAAGCTTATCATAAATATCTAGAAAGTT
TAGGAAAATACTGTACCCATGAGCCACAGATAGGAATCTACTGGGATGTC
ATTCAGAAAACACAAAAGAATAAAGTAAAACAAAAAGCTAAAAACAAAAA
AAAAAAAATCAGAGGGGATAAAAAGCTTGGATGAAAGTCTGAAAAAAATT
GAATGCACAGTAATAGAAGTTCAAAATTTTTTATTTCCCACCCACCCCCG
ACTATAGGAAATCATCAAGAAGGTAATTTTTAACACCCCCCACAAAAAAA
AAAAAAAATGAGTTTGGGGAGGGAAAGGGCTCGCCAGAAACATAAACAAT
GAATGAAAATAGACTCCTGTAGGGCAGAACTTCAGAACTGGATTACAAAG
GGATAATTCTCAAAGATTCTAGATGGAAGGACAAGTCACACACAAAGCAC
CGAAAATCAAAGTAACCCTGTAAGCTAGGAGAATGACGGATTCCTTTAAA
ATTAAAGGAGAAAAAAAAATCTATGTAAAATTCCATAAAGATCCAAGTTA
TCAATCAGGTAGAAAGAGAAAATACCGGGTTTGCCAAGAAAGCAAGACTC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_d05.b1 MSMg01no311_d05.b1 CHROMAT_FILE:
MSMg01no311_d05.b1 PHD_FILE: MSMg01no311_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:59 2005
         (323 letters)



>mm_chr18_57643652_57644374
          Length = 723

 Score =  586 bits (303), Expect = e-172
 Identities = 315/319 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaatccttgggctacttcacacgggcgttaatgagggtgtattgtgattcttca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaattcaaatccttgggctacttcacacgggcgttaatgagggtgtattgtgattcttca 464

                                                                       
Query: 65  agcctctttcacactgcattcagtgaatgggccctaaagtcccagctaggaatgtctggt 124
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 463 agcctctttcacacttcattcagtgaatggaccctaaagtcccagctaggaatgtctggt 404

                                                                       
Query: 125 tgaaaagtaaaaggaatttggaaattagcccaaacttctcaatttacaatttatggaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgaaaagtaaaaggaatttggaaattagcccaaacttctcaatttacaatttatggaagg 344

                                                                       
Query: 185 gagcctgagagaagtcgaatggttttcttcctctggattaagttcagggccttgaacatg 244
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 343 gagcctgagagaagttgaatggttttctttctctggattaagttcagggccttgaacatg 284

                                                                       
Query: 245 cgaagcttgggcttcacagctgagcttactacacacccaggtaacagaagggagcctccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cgaagcttgggcttcacagctgagcttactacacacccaggtaacagaagggagcctccc 224

                              
Query: 305 actgaattccacatagaat 323
           |||||||||||||||||||
Sbjct: 223 actgaattccacatagaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)