BAC Information

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BAC

Clone NameMSMg01-311H09
Chromosome18 (Build37)
Map Location 88,003,876 - 88,004,188
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1, LOC329008
Downstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311H09.T7 (MSMg01no311_h09.b1)MSMg01-311H09.TJ (MSMg01no311_h09.g1)
ACCAG433957AG433958
length735736
length of high quality
(start - end)		319 (46 - 364)281 (83 - 363)
definitionCHROMAT_FILE: MSMg01no311_h09.b1 PHD_FILE: MSMg01no311_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:19 2005CHROMAT_FILE: MSMg01no311_h09.g1 PHD_FILE: MSMg01no311_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTCTTATATGTTATCAAAGTCTTTCCTTTTTTGAGCACAATA
CTTTGTGAGTGCTAATTTTACATGGAGAGTTGTTTGGGTACTTCATTTTT
TTCACTATGCTGTGGGAGTTAGAAATCCAGTCATAGGCCTGTTATACCAT
AATTTGGTATGAAAATATTCTCTCCCCTTTGTAATTGGATGTTTCTATAT
ATTCTAATTTCTCAGGCTGTTGAACAAGTCTATGTGACTTAGGGTTCAGT
CTTTGAACAATTTGGTGTTAATACCCTAATTGGGTTTCATGAATGGTCAT
GGCTCAGCTTGGTTTTTCTTAGACCGGCCGCATCAAGGAGGCACAGGGAG
GCAGGCAAGACTCATTCCCACCCCACATCACAGAAGTCATACTGAGGTAT
TTTAATATCTAAGCTAATTAAAACCATCTCACAAACATTCAATAGCATTG
TTCATCGTTTATATATTTTCTGGTTCATAACTCTAGTATAGATGGATTTA
TATATGTGTCTCCATTCCATGATACAATTAATTCTCTGTATTTTTAACAT
TTGAATTGTACTTTGTGCTTGCCAATTTGATGGCTCTGATAATGAACCTT
TTTATATCTGAGTTTGATTTTCCTCCAGGTCCTTAAAGGCAGAGAACACA
CTTCTTTGATGAGACTTAGACTTATCAGGGTAGGA

CTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCTAGCTCAAACTTCT
CTCCAAGCTGATTGATTCAAACTGGCCTTTCTCTGCTTCTCACTAAGTTG
ATATACTTGGGCTCAAACTAACTCTGATAATTTGTTCTACTCTTCTGGCT
TCTCGTTCTCTGGCTTCAATGCCTCTGCTGAAGTCATGAATGAACTCAGC
ACCACTGTACAACACCCACTACACTGATTTCCAACTAACTGAACTAAACT
TACTGAATCTCTTTCTCTGCCCTGCTTCTTAATAGCTTTTCTTTCCTAAG
CTGTCCTCATGATATTTTTGTTTTATCCCCCCTCTCACTCAACCTGCCAA
ATCTTTCTTTGATTCATCACCCCCCCTTCAACAAAATAAAATGTCGGTTG
GGGGGGGGGTGCTTCCTTCTGTAAACTAATAATATTTACATTGGTTGGGA
TTAAAGATCAGTATTAAAGGCATGCCTTTTCCAGCCAGAGTAATCATGTT
GTTGGATTAAAATTCCTCCTCATAAATCCTGCATCTGTGACTGTAGTTTT
CATGGTCTTAGATCGATCTTTCCCTCCAGCTTTATTGCCTACAAAAAAAA
ACTCTCCTCTAAGCTGATTCTACTCCCTGTGAAAAGGTTCTTGCCAGATG
TCTCATCACTTGGCTCATTCACTAAATGCTTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_h09.b1 MSMg01no311_h09.b1 CHROMAT_FILE:
MSMg01no311_h09.b1 PHD_FILE: MSMg01no311_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:19 2005
         (319 letters)



>mm_chr18_88003672_88004390
          Length = 719

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgtcttatatgttatcaaagtctttccttttttgagcacaatactttgtgag 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 517 gaattcattgtcttatatgttatcaaagtctttccctttttgagcacaatactttgtgag 458

                                                                       
Query: 65  tgctaattttacatggagagttgtttgggtacttcatttttttcactatgctgtgggagt 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 457 tgctaattttacatggagagttgtttgggtaattcatttttttcactatgctgtgggagt 398

                                                                       
Query: 125 tagaaatccagtcataggcctgttataccataatttggtatgaaaatattctctcccctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tagaaatccagtcataggcctgttataccataatttggtatgaaaatattctctcccctt 338

                                                                       
Query: 185 tgtaattggatgtttctatatattctaatttctcaggctgttgaacaagtctatgtgact 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgtaagtggatgtttctatatattctaatttctcaggctgttgaacaagtctatgtgact 278

                                                                       
Query: 245 tagggttcagtctttgaacaatttggtgttaataccctaattgggtttcatgaatggtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tagggttcagtctttgaacaatttggtgttaataccctaattgggtttcatgaatggtca 218

                        
Query: 305 tggctcagcttgg 317
           |||||||||||||
Sbjct: 217 tggctcagcttgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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