CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATATTACTGTAGTTGGGATGGAGTTCTTTCAGGTCTTTTGCATT
TTGCACATCATTCTGACAGTGGCAAACATTATTTCTGTTCATATTTCTTC
AGAACTAGAGATGTATTTGCTTATGGCTCTGGGGTGTAGAAGTGCAGGAA
TAAGCTTCTAGCAGGGGAGATCTCATTCTAAGCCTTCTTCTCTTATTTTA
TGGGCAGTTGTCACTCTTAGTTTGACCACCCAGGCTTTCTCAGAGCATGC
ACTGGAGAGAATTGAATAAGAGCACGGGAGATTCCTGAGATTTTTCCAGT
GTCTTCTAGAAGTATGTATTCTGTGTTGCCTTCTTGAATTCCATTTATCT
ATCCTTTACTACTTCTTAAAATGTCCATTTCCAAACACACCGTAGTAATC
ATGAAATATTTGCCTCAGAAATATTAGGAAACACAAGACTTCAACCTGTG
ATAATTCCAATGTGAACTCACTAATGCAGCATCTGTCTGAGCTGATTAGA
GACTTCAACTGGGGAAAAAGATATATCACAACCATTACACTTGTGCTGTC
TGCTATGCTAAGAATCAATTCTTACACTCTGATTCATAGTCTGGAGTCTT
TGTCTGTATCTATTANAGTATTCAAAATAATATATTCACCTGCAAGCAGG
ATAACACTAAAATACAACAACAACC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAACACCTGAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGG
GAACACTCCTCCATTGTCGGTGGGATTGCAAGCTTATACAACCACTCTGG
AAGTCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCTGCAATACCACTCCTGTTTTTATATCCAGAAGATGTCCCAACCGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTAGTTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATTTACACAGTGGAATACTACTCAGCTATTAAAAAAATGA
ATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGA
GTGAGGTAACCCAGTCACAAAGGAACTCGCACAATATGTACTCACTGATA
AGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACGACT
TGCCAAACGCATGAAATTCAAGAAGAACGAAGAA

Query= MSMg01no311_m02.b1 MSMg01no311_m02.b1 CHROMAT_FILE:
MSMg01no311_m02.b1 PHD_FILE: MSMg01no311_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:42 2005
         (621 letters)



>mm_chr18_19637167_19638186
          Length = 1020

 Score = 1085 bits (561), Expect = 0.0
 Identities = 603/619 (97%), Gaps = 5/619 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatattactgtagttgggatggagttctttcaggtcttttgcattttgcacat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gaattcttatattactgtagttgggatggagttctttcaggtcttttgcattttgcacat 761

                                                                       
Query: 65  cattctgacagtggcaaac--attatttctgttcatatttcttcagaactagagatgtat 122
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cattctgacagtggcaaacagattatttctgttcatatttcttcagaactagagatgtat 701

                                                                       
Query: 123 ttgcttatggctctggggtgtagaagtgcaggaataagcttctagcaggggagatctcat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ttgcttatggctctggggtgtagaagtgcaggaataagcttctagcaggggagatctcat 641

                                                                       
Query: 183 tctaagccttcttctcttattttatgggcagttgtcactcttagtttgaccacccaggct 242
           |||||||| |||||||||||||||||||||||||||||   |||||||| ||||||||||
Sbjct: 640 tctaagccctcttctcttattttatgggcagttgtcac---tagtttgatcacccaggct 584

                                                                       
Query: 243 ttctcagagcatgcactggagagaattgaataagagcacgggagattcctgagatttttc 302
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 583 ttctcagagcatgcactggagagaattgaataagagcaagggagattcctgagatttttc 524

                                                                       
Query: 303 cagtgtcttctagaagtatgtattctgtgttgccttcttgaattccatttatctatcctt 362
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 523 cagtgtcttctagaagtatgtattctgcgttgccttcttgaatgccatttatctatcctt 464

                                                                       
Query: 363 tactacttcttaaaatgtccatttccaaacacaccgtagtaatcatgaaatatttgcctc 422
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 463 tactacttcttaaaatgtccatttccaaacacaccgtagtaatcatgacatatttgactc 404

                                                                       
Query: 423 agaaatattaggaaacacaagacttcaacctgtgataattccaatgtgaactcactaatg 482
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agaaatataaggaaacacaagacttcaacctgtgataattccaatgtgaactcactaatg 344

                                                                       
Query: 483 cagcatctgtctgagctgattagagacttcaactggggaaaaagatatatcacaaccatt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cagcatctgtctgagctgattagagacttcaactggggaaaaagatatatcacaaccatt 284

                                                                       
Query: 543 acacttgtgctgtctgctatgctaagaatcaattcttacactctgattcatagtctggag 602
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 283 acacttgtgctgtctgctatgctaagaatcaattcttacactctgactcagagtctggag 224

                              
Query: 603 tctttgtctgtatctatta 621
           | |||||||||||||||||
Sbjct: 223 tatttgtctgtatctatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1020
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1010
Effective search space:   617110
Effective search space used:   617110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)