BAC Information

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BAC

Clone NameMSMg01-311O14
Chromosome18 (Build37)
Map Location 40,467,673 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311O14.T7 (MSMg01no311_o14.b1)MSMg01-311O14.TJ (MSMg01no311_o14.g1)
ACCAG434275AG434276
length761719
length of high quality
(start - end)		228 (46 - 273)277 (77 - 353)
definitionCHROMAT_FILE: MSMg01no311_o14.b1 PHD_FILE: MSMg01no311_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:53 2005CHROMAT_FILE: MSMg01no311_o14.g1 PHD_FILE: MSMg01no311_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:53 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGGGAAATCATCACTCAGGGACTTCAGGCAGAAAACTAGCCAG
TCAGCCTCTGGATAGACATGGCTCAACAGTTCAGAGAACCAGGCCATCGC
AAATAGTTCACAGACCTGCAAGGAAGACATGCAGATCCCTGCCCCCCACC
CTACCCCTCCCCCAGCCCCACCCAAACATAGGGAGAAAAGGCAGTGTGGG
GGAGGGGGAGGTGCTGTGANANANTTNNNNNNNNNNNNNNNNNNNNNNNN
NNGNNNNNNNNNNNNNNNNNNTTTTTTTNTTNNNTNTNTNNNNNNNNNNN
NNNNNNNNNTTTTTTTTTTTTTTCCCCCCCCCCCCCTTCTTTTTCTTTTT
NTTTTTTTTTTTTTTTNCCCCCCCCCCCCCCANCAAAAAAAAAAATNTTT
ATTTTTTCTCATATACCTAACCATCTTCCTTAACCCCTTAATCCTTATCC
TCTAAACCAAAATTATTTATCTCACTCTTCTCTTCTTCTCACCTTTTATT
ATCCTATATTTATTCCTTCCTTACCCCTACAACTCTTTCTTCTTTCTTCT
ACTTTTCACCTTTTTCTTCCTCCTTATTATTTATCCCTATATTCCTTTCT
AATTATTTTACCCATCTCATCCATTCCACCTTCTTTTTTTTTTCCTCTCA
TTCACTATATTATTCCCCTCCCTCCTCCATCATTATTCATTTTTCCCCAT
CTTTTTCTCTT

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGT
CCACATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCA
TACCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGA
AAGAGGAAGGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCGCCCTG
TCAGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTT
TGGAATTTCTACTTCATGTTTAATTTTTTTTTTTTTTTTTTTTTTTTTTT
GAGAAAGAATTTTCCCTGATTTCCCCCCCCCCCCCCGAAATNAATTTGGA
AAACAAGGTGGGNTTGTCCCCCCAAAAAAAAAAAAAAAAGGCGGGGGGGG
GGGGGGGTTAATCTCCTTCCCCCCCCCCCCCCGCCCCCTGGTTAATGGTT
AATAAACCTTTAATAAACCTTTAATAAACATTGGGAAGGTCTGAAAAAAT
GGATCCTCCGTTAATAACCTTGACTTTTCTTGGATAAGTCCCGGAATCAT
TTCCAGGAATCACCCGGTGGCTTTGGAATCCGAAGCCACTTTTGGGCGGT
GATGGTATACCTCCTTCCTTGTCCCTCTCTTTCCAAACTCACTTCTCCTT
CCAATATATGCAAAACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_o14.g1 MSMg01no311_o14.g1 CHROMAT_FILE:
MSMg01no311_o14.g1 PHD_FILE: MSMg01no311_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:53 2005
         (277 letters)



>mm_chr18_40467474_40468149
          Length = 676

 Score =  387 bits (200), Expect = e-112
 Identities = 236/248 (95%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 446 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 387

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 386 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 328

                                                                       
Query: 121 cagaaagaggaaggctccactcactagtacactttcactagaagcctcgccctgtcagca 180
           ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct: 327 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 268

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 267 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 208

                   
Query: 241 tgtttaat 248
           ||||||||
Sbjct: 207 tgtttaat 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 676
Length adjustment: 9
Effective length of query: 268
Effective length of database: 667
Effective search space:   178756
Effective search space used:   178756
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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