BAC Information

Click to search

BAC

Clone NameMSMg01-312D10
Chromosome18 (Build37)
Map Location 37,570,361 - 37,570,626
singlet/doubletsinglet
Overlap genenone
Upstream genePfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9
Downstream genePcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312D10.T7 (MSMg01no312_d10.b1)MSMg01-312D10.TJ (MSMg01no312_d10.g1)
ACCAG434495AG434496
length749749
length of high quality
(start - end)		269 (38 - 306)253 (68 - 320)
definitionCHROMAT_FILE: MSMg01no312_d10.b1 PHD_FILE: MSMg01no312_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:14 2005CHROMAT_FILE: MSMg01no312_d10.g1 PHD_FILE: MSMg01no312_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
CCAAACAGATCTACATCCTCCTTTGCCCTATTTAACTTTTCCTTTCCACT
ACTTCTGGTGGGCCCCTGGCTAGAAGGGGGGTTAAAGCATTGAAGTCCCC
TTATTAAAAGTAGGCTGTGAAAGAAATCAAAGTCTACACACAATAACCCA
ATTCCTAGAAATAAAAACATATTACAGAAAAATGGTAAATATAATAGTTG
TCATAGCATTACCCTTTAATAAAGTTAAAAACTGAAAACTACCATTGTTT
ACAAACTGCTTTTTTTTTTATGAATCAAGGCATACCCCAACAGAAGAGGA
TTATAATANTTTCCCGAGNACAGAGGACCCCAAAAATAGNGAGAGAGGAN
NGCNGGGGNCCCCCCCCAANNCNNCAACCNCAAAAGAGGNNNCGGCNAGG
GNGCCCCCNNACAAAACACCCAACCAAGAAGAGCAAAGAGCAAAGGAAGC
ACGCAAAACGCCGCAGCGGAACAGGAGACCAGCCGGAAAAAGCCCCAAAA
CACACGGACGCACCAGAACCCCAAAAGAGGCGCAAAACACAAACAGCCAA
GCAAACAAAACCCCACGAGCCACAGCGAAAACACCAGAACGCGACGCCTT
AGAATGGCACCCCAAAAAAACACCAAAAAGGCCGGAAAGACCCAAACGAT
TTTCTTTTTCCCTTTTCTCTTCCATTATTTTCTGTATTTATCACCGCAT

ATGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTATAACCCAATGGGACAGGTAATTGTTGAGC
ATGCACATTGTACTCTGAAAAACTGGCTTTTAAAAACAAAAAACAAAAAA
ACAAAAACAAAAAGGGGAGAGTTATATCTTCCAAGGTCACCAAAAAGCAA
ACCTTGCTTTTGTCTTACTTGTTTCAATTTTTTTTGCAAACTGATGCTAA
AGGTCAATTTTCAGCAGATCACCCATTCTATTTCATTCCCAGACTCCCTT
TCAGGTATACCCAGTTCTCCCTGGCCACTGGATGCACACCAGGTGATTAA
ACAAATTTCATCCCTTCCCCATGCAGCCCCCCAGGTTATTACATCCCAAT
CACAGATTCCCCCCCCCCCAAAAATTTAGAAAAATCGCATGGGGGGGGGG
GGGGTCTCCCTCACATTATCCTCACAGAAGCGAGGCCTATCATGAATATC
ATCCCTCCTCTGGCACATCAAGTTACTGGAGAATTAAGTGCAACTTATCC
CTTTGAACTTATACAAAAGAAGCACAGTTAATGGAAAGGAATCCCAATGA
ACCCTTGAAATCCCGAAATAAACCCTGTTTCCCATGGTAAGTACTTCAAA
TAGATGACCAGACTGGAAATAAAGCTATATTACCATACGCTCATTTTATC
GCCCCTCCCACACTTTCACACGGAATTTCACACCACCTACACCAATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_d10.b1 MSMg01no312_d10.b1 CHROMAT_FILE:
MSMg01no312_d10.b1 PHD_FILE: MSMg01no312_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:14 2005
         (269 letters)



>mm_chr18_37570158_37570826
          Length = 669

 Score =  460 bits (238), Expect = e-134
 Identities = 259/270 (95%), Gaps = 9/270 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccaaa-cagatctacatcctcctttgccctatttaacttttcctttccact 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttccaaaacagatctacatcctcctttgccctatttaacttttcctttccact 263

                                                                       
Query: 64  acttctggtgggcccc----tggctagaaggggggttaaagcattgaagtccccttatta 119
           ||||||||||||        ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acttctggtggg----ggtatggctagaaggggggttaaagcattgaagtccccttatta 319

                                                                       
Query: 120 aaagtaggctgtgaaagaaatcaaagtctacacacaataacccaattcctagaaataaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaagtaggctgtgaaagaaatcaaagtctacacacaataacccaattcctagaaataaaa 379

                                                                       
Query: 180 acatattacagaaaaatggtaaatataatagttgtcatagcattaccctttaataaagtt 239
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 acatattacagaaaaatggtaaatataatatttgtcatagcattaccctttaataaagtt 439

                                         
Query: 240 aaaaactgaaaactaccattgtttacaaac 269
           ||||||||||||||||||||||||| ||||
Sbjct: 440 aaaaactgaaaactaccattgtttagaaac 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |