BAC Information

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BAC

Clone NameMSMg01-313H07
Chromosome18 (Build37)
Map Location 59,786,177 - 59,786,474
singlet/doubletsinglet
Overlap genenone
Upstream geneIsoc1, Adamts19, A730017C20Rik, 4833446K15Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313H07.T7 (MSMg01no313_h07.b1)MSMg01-313H07.TJ (MSMg01no313_h07.g1)
ACCAG435377AG435378
length1,3351,301
length of high quality
(start - end)
714 (135 - 848)299 (506 - 804)
definitionCHROMAT_FILE: MSMg01no313_h07.b1 PHD_FILE: MSMg01no313_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:10 2005CHROMAT_FILE: MSMg01no313_h07.g1 PHD_FILE: MSMg01no313_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAATAAANNNNNNNNCCACTCGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTCAATTCTGAATATCTCTTTTTAAAATACAAGGGCAGC
CACATTCATTAAAGAAACTCTTTAAAAGCTCAAAGCACACATTGAACCTC
ACACAATAATAGTGGGTGACTTCAACACACCACTTTCACCAATGGACAGA
TCATGGAAAAAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTGT
GAAACAAATGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAA
AAGGATATACCTTCTTGTCATCACCTCATGATACTTTCTCCAAAATTGAC
CACATAATTGGTCACAAAACAAGCCTCAACATATACAAAAATATTGAAAT
TGTCCCATGCATCCTATCAGATCACCATGGACTAAGGCTTATATTCAATA
ACAAAATAAATGATATAAAGCCAACATTCATGTGGAAACTGAACAACACT
CTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAGGA
CTTTTTGGAGTTTAATGAAAATGAAGGCACAACATACCCAAACTTATGGG
ACACAATGAAAGCATTTCTACGAGGAAAACTCATAGCTCTGAGTGCCTCC
AAAAAGAAACTGGAGAGAGCACACATTAGCAGCTTGACAACACACCTAAA
AGCTCTAGAACAAAAGGAAGCAAATTCACCCAAGAGGAGTAGATCCCAGG
AAATAATCAAACTCAGGGATGAAATCAACCAAGTGGAAACAAGAAGAACT
ATTCAAAGAATCAACCGAACGAGGAGCTGGTTCTTTGAGAAAATCAACTA
GATAAACACTTAGCCAGACTCACTAGAGGGCACAGGGAAAGCATCCTAAT
TAACAAAATAAGAAATGAAAAGGGAGACATAACCACAGATCCTGAAGAAA
TCCAAACACAATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGG
AAAACCTGGATGAAATGGACCAGTTTCTAGACAGAAACCAGGTACCAAAG
TTAAATCAAGATCAGGTTAATGATCTAAACAGTCCTATATCTCCTAAAAA
AAATAAAACCGCCTTAATAGCCTCCCACCCCAAAAATCCCCGAAACAAAT
GGTTTAAGGCCAAAATTCTTCAAACATTCAAGAAGAAATTAACCCAGTTT
TCTCAAAATATTCACAAAAATAAAACAAAAGATTCCTCCCCCCTCTTTTA
TAAGCCCCTTATTCTTGTATCCTACTCCAAAGAACCCCCAAGAAGAAACT
CCCACACTTCTCTTATATTGTGGCGAAACCTCTCA
NATTTATNNNNAAATGACGAGAGCTGGGGCGCCTGTXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGTGTTTTTTCTTCATTCTC
CAGTACTCACATTCTTTCTGCCCTCCTCTCCCAAGGCTTTTATGAACCTT
GGATGGAAGCTGACTCGAGAGATGACTCCATCTGCCCCTGAGCACTCAGT
CACTGATGCTAAGCACTTTGATGGGTATCTATTTTTAAAAGAATGAAAGA
AGTATGAGAAAATATTTTAAGACTTTGAAATTTCATAAACATAAGAATCA
AGATTTTCTAAAAGAAAACGAAATGCTGCTTTAGACATTCTTGCATTTAT
AGTCTAGTTTGGGTAAGTTTAAGAATTTATTATTTATTGTATTTAAGAAT
ACTATAGATAAAAGCAACTATTTTGTGATGTGATAGCCATTATGTTAATA
TTAAGATTATTATTTACCTCCCATATCCTTCACACAGATAGACATAACAA
AGGTGTCAAATTAAATGAGCGTATGAAACAGTAAGGATATTAACAGATTG
CCAAGTAAAATGGGAGTAACCTTAAACCTTGATAAAATTCCCATCTCGTC
TGAATATTCAGAACATTGAAAGATAAAGCATTTGTTAACCATGAATAGCT
ATGGGATTGCAGTACTTTGTTAATTTTTTTTTATATTTTATATGAAGAAT
GTTTCACTATTATTATAATACCCAAAAGTCATATTTTGGTTTTAAAAATG
TAAATTCCTAGCAATCAGTGTTTTCTCTATAACTTTGCAACTCAATCTCC
TGGGAAAGAACACTAACAAAAAAGTGTTGTGTTTGTAATAATTTGAAGAT
AAATTATGTTGGAAGGTATGAAATGGGATAAATCTTATAACATTTATAAA
TGCATTTTCTGTCTCCTGCAGAACATCAGTGAACATATGTATTCCTATGA
GAGAAGTGGAATTCATAAGGAACTAAATTACTGAAAGATCTGTATTTTTA
ATTTTGAAATTGTTTTGTCCTGCAAAAGCACCTTACCCTGAAGAACCGAC
CTCAAGTAACTTTCTTTTATTTTTAGGAACTTAATGTTTCTCGAAAAAAT
TATAAGGATTTAAAAATTTTGTTTGGTTAAGAAAGGGGAACACGGGCCCC
CCTGCTCCTCACAAAAAGGGAAATTTTTGTTGTGTGTGTCTCGTTCTGTC
TTTAACAAGAATTTTTTCTTATACTCCCGGTGCTTTCTACACTCTTTGTC
ACATACTGGCCTTCTCACTAATAATTCCCCCTTCCCCTTCTCCTTCATAG
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_h07.g1 MSMg01no313_h07.g1 CHROMAT_FILE:
MSMg01no313_h07.g1 PHD_FILE: MSMg01no313_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:10 2005
         (299 letters)



>mm_chr18_59785789_59786487
          Length = 699

 Score =  532 bits (275), Expect = e-155
 Identities = 293/299 (97%), Gaps = 1/299 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaattaaatgagcgtatgaaacagtaaggatattaacagattgccaagtaaaatggga 60
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcaaattaaatgaatgtatgaaacagtaaggatattaacagattgccaagtaaaatggga 627

                                                                       
Query: 61  gtaaccttaaaccttgataaaattcccatctcgtctgaatattcagaacattgaaagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtaaccttaaaccttgataaaattcccatctcgtctgaatattcagaacattgaaagata 567

                                                                       
Query: 121 aagcatttgttaaccatgaatagctatgggattgcagtactttgttaatttttttttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 566 aagcatttgttaaccatgaatagctatgggattgcagtactttgtta-tttttttttata 508

                                                                       
Query: 181 ttttatatgaagaatgtttcactattattataatacccaaaagtcatattttggttttaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 507 ttttatatgaagaatgtttcactattattataatacccaaaagtcatactttggttttaa 448

                                                                      
Query: 241 aaatgtaaattcctagcaatcagtgttttctctataactttgcaactcaatctcctggg 299
           |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 447 aaatgtaaattcctagcagtcagtgttttctctataactctgcaactcaatctcctggg 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)