Query= MSMg01no313_j12.b1 MSMg01no313_j12.b1 CHROMAT_FILE:
MSMg01no313_j12.b1 PHD_FILE: MSMg01no313_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:28 2005
(417 letters)
>mm_chr18_6931729_6932545
Length = 817
Score = 623 bits (322), Expect = 0.0
Identities = 368/400 (92%), Gaps = 27/400 (6%)
Strand = Plus / Minus
Query: 15 gaattctgagtatttgttttaatctattttgtttgaagggataccatccagattttcata 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaattctgagtatttgttttaatctattttgtttgaagggataccatccagattttcata 362
Query: 75 agtatcccagctcaccccccccacaatggatggattcgcttacttcacatgcttgccagt 134
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtatcccagctcacctccagcacaatggatggattcgcttacttcacatgcttgccagt 302
Query: 135 accagctacagtatggcttctacaacagcagtctcctctggactgagctgatgtccccca 194
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 accagctacggtatggcttctacaacagcagtctcctctggactgagctgatgtccccca 242
Query: 195 cggtacccctagaaactgatgatgactaattattattattattattattattgttattat 254
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 241 cggtacccctagaaactgatgatgact---tattattattattattattatt-------- 193
Query: 255 tgttattattattattattattattattattattctgtagtctcttgagaactgtctgtg 314
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ----------------attattattattattattctgtagtctcttgagaactgtctgtg 149
Query: 315 ttacacatgtcaattccctgaggaagatatggacatctactccttcctccttatgcccta 374
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 148 ttacacatgtcaattccctgaggaagatatggacatctactccttcctcctaatgcccta 89
Query: 375 acaacaagccaaagtagaattctaccactattccccctgg 414
||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 acaacaagccaaagtagaattctaccactattccccctgg 49
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_j12.g1 MSMg01no313_j12.g1 CHROMAT_FILE:
MSMg01no313_j12.g1 PHD_FILE: MSMg01no313_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:28 2005
(371 letters)
>mm_chr18_6776535_6777305
Length = 771
Score = 652 bits (337), Expect = 0.0
Identities = 359/367 (97%), Gaps = 2/367 (0%)
Strand = Plus / Plus
Query: 1 ctgcatgattgggtagaagaaattctatactttagtttttcttggacttttcacccagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 201 ctgcatgattgggtagaagaaattctatactttagtttttcttggactttttaatcagca 260
Query: 61 ctgtcatttcatttattattgcttctttttccctaagcataccttgatcaattcctttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtcatttcatttattattgcttctttttccctaagcataccttgatcaattcctttat 320
Query: 121 ttctcaagctttacacaccaaatggtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgt 180
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 321 ttctcaagctttacacaccaaatggtgtgcgtgtgtgtgtgtg--tgtgtgtgtgtgtgt 378
Query: 181 gcacataaatgtctatggatctatatcctataggaagactatatttgatgcatattttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcacataaatgtctatggatctatatcctataggaagactatatttgatgcatattttta 438
Query: 241 cctaatttgaacatgtaatagattattggaagacttgtaaagattacaaatatactagta 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cctaatttgaacatgtaatggattattggaagacttgtaaagattacaaatatactagta 498
Query: 301 tattggtaacatacttattttaataattgtaatacattaacttttaagaaagcattttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tattggtaacatacttattttaataattgtaatacattaacttttaagaaagcattttgt 558
Query: 361 atgctgg 367
||||||
Sbjct: 559 ttgctgg 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
