BAC Information

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BAC

Clone NameMSMg01-315D07
Chromosome18 (Build37)
Map Location 64,260,404 - 64,260,704
singlet/doubletsinglet
Overlap genenone
Upstream gene9030411M15Rik, LOC627792, Txnl1, Wdr7, LOC629436
Downstream geneLOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315D07.T7 (MSMg01no315_d07.b1)MSMg01-315D07.TJ (MSMg01no315_d07.g1)
ACCAG435913AG435914
length714718
length of high quality
(start - end)
347 (68 - 414)320 (74 - 393)
definitionCHROMAT_FILE: MSMg01no315_d07.b1 PHD_FILE: MSMg01no315_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:36 2005CHROMAT_FILE: MSMg01no315_d07.g1 PHD_FILE: MSMg01no315_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAGAATCCGCGGAATTC
CTCCAGTGTTTGCTGTAATGTTTCTCTATTTATTTCTGATTCTGCTGATT
TTGGGCATCATTTTCTTACTTTTGATTAATTGGGCCAAGGGTCTGCCAAT
CTTGTTTATCTTCTCAAAGAATAAGTTCTTAGATTCCTTGATTCTATTAA
TTGTTGTCTTTGTTTCTACTCCAATTAATTTCTGTTCCAACTTTAATTAT
GTCTACCCATCTACTTGATTTGCTTTTGGTTTGTTTTTCTTTTTCCAAAT
TCTTGAGTTGCACCATTAAATTATTTATTTATACCTTTTTAATGTAGGTG
CTTAGAGCTATAAAATCCCCTCTTAGGTCTGCTTTTAATTTTTTAATTTT
TTCTATGAGGTTTCCCCCACCTGTTATTGTTATTTTCATTTAATCATAAA
AAGTTTTATTTCTTTTGTTAATTTTTTGATCCATTCATTATTAAATGATA
TGTTACTTACTTTTCATAAGTTCAGGTAACTATGAGATACTTGTGTGCTT
CTGACTTTAAGCTTCTTCTCCTCCTCCTCCTCCTCCTTCGTTTTTTGAGA
CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTTACTTTGTAGACC
ATGCTGGCTTTTAACTAAGAAATCTGCCTGCCTCTGCCTTCTGATTGCTG
GGATTAAAGGCATG
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCGGCTACAGCTGCATTGACATGTG
ACTGCCTTTGCTGGTGACTGCCTTTGCCACCATAGAGAATCTGCTAGAGC
AGAACAGAAACTCAAAATCAGAAGACATAGCCCAAATCTCAACAGAAGGG
GTTGCAAATAATTTGTGAGCCATGGATTAAGACTACAACTGTCAGGATAC
TGTCATGGGCCACTGAAGTGAGAACCTTTAATGAGAGAGATGATATCCTG
ATACTATTTGAAGCTCTTGATTGGTCCTGTTATTGAAGATTCATCTTTCT
TTTATGTAGTCACTGAATCCACCCTGCCCTTTTCTTTGTTCAAGCCAGAA
TTGAATTGAGTTTCTATCTTCCCCCCCCGACCTAAAGAGAGATTGGAGAA
ATGCTCTCCACCATCCCTTTGAAAAACAACGAAAAATAACCCTGTTAGCA
CCCATATTGTAATTATGTTCAGAATCCGCCACACATATTTGGGGGGGTGG
GTCACATTTTCATATTGATCTATTTGCTCTTTTGCGTATGCGTATCTTTC
CCTCCCTCCTCTATCTCCCTCTCATCTGTGTGTGTGCGCTTGCGTGCGTG
TGCGCGTGCTCGTGACACACAGACATTCAGTCACCCTGTCCTCTGTCGTG
CACTGCCCTTTCTCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_d07.g1 MSMg01no315_d07.g1 CHROMAT_FILE:
MSMg01no315_d07.g1 PHD_FILE: MSMg01no315_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:36 2005
         (320 letters)



>mm_chr18_64260188_64260907
          Length = 720

 Score =  524 bits (271), Expect = e-153
 Identities = 298/317 (94%), Gaps = 16/317 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcggctacagctgcattgacatgtgactgcctttgctggtgactgcctttgccaccat 60
           ||||||||||||||||||||||||||||||||||||||                ||||||
Sbjct: 217 tttcggctacagctgcattgacatgtgactgcctttgc----------------caccat 260

                                                                       
Query: 61  agagaatctgctagagcagaacagaaactcaaaatcagaagacatagcccaaatctcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaatctgctagagcagaacagaaactcaaaatcagaagacatagcccaaatctcaac 320

                                                                       
Query: 121 agaaggggttgcaaataatttgtgagccatggattaagactacaactgtcaggatactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaggggttgcaaataatttgtgagccatggattaagactacaactgtcaggatactgt 380

                                                                       
Query: 181 catgggccactgaagtgagaacctttaatgagagagatgatatcctgatactatttgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgggccactgaagtgagaacctttaatgagagagatgatatcctgatactatttgaag 440

                                                                       
Query: 241 ctcttgattggtcctgttattgaagattcatctttcttttatgtagtcactgaatccacc 300
           |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ctcttgatcggccctgttattgaagattcatctttctttcatgtagtcactgaatccacc 500

                            
Query: 301 ctgcccttttctttgtt 317
           |||||||||||||||||
Sbjct: 501 ctgcccttttctttgtt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)