BAC Information

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BAC

Clone NameMSMg01-315I02
Chromosome18 (Build37)
Map Location 4,623,011 - 4,623,545
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354
Downstream geneLOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438, LOC100039442, Zeb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315I02.T7 (MSMg01no315_i02.b1)MSMg01-315I02.TJ (MSMg01no315_i02.g1)
ACCAG436129AG436130
length731744
length of high quality
(start - end)
687 (45 - 731)535 (73 - 607)
definitionCHROMAT_FILE: MSMg01no315_i02.b1 PHD_FILE: MSMg01no315_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:59 2005CHROMAT_FILE: MSMg01no315_i02.g1 PHD_FILE: MSMg01no315_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATGATTCCCGATTTTTATCATGAATGGGTGTTGGATTTTGTCA
AATTCTTTTTCTGAATCTAACCAGATGATCAAGTGGTTTTAGTCTTTGAG
TTTGTTTATATACTGGATTACGTTGATGGATTTCTGTATATTGAACCATC
CCTGAATCCCTGGAATAAAACCTACTTTGTCAGGATCGATGATTGTTTTG
ATGTGTTCTTGGATTCGGTTAGCAAGAACTTTATGGAGGATTTTTGCATC
AATATTCATAAAGGAAATTGGTGTGAAGTTCTTTATCTTTGTTGGGTCAT
TTTGTGGTTTAGGTATCAAAGTAATTGTGGCTTCATAGAATGAGTTGGGT
AGAGTACCTTCTGTTTCCACCTTGTGGAATAGCTTGAGAAGAACTGGGAT
TAGATCTTCTTTGAAGATCTGATAGAACTCTGCACTAAACCCATCTGGTC
CTGTGCTTTTTTTGACTGGGAGACTATTAATGACTGCTTCTATTTCTTTG
GGGGATATAGGGCTGTTTAGATCATTAACCTGATCTTGATTCAACTTTGG
TACCTGGTATCTGTCTAGAAACTTCTCCATTTCATCCAGGTTCTCCAGTT
TTGTTGAGTATAGCCTTTTGTAGAAGTATCTGATGGTGTTTTGGATTTCT
TCAGAATCTGTTGTTATGTCTCCCTTTTTAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAAATTCAGATAAGACTGATAAATGTGTTGTA
ATTCCTGGAAATGCTATGATCATACCTAGGGTGAAGATCAGTGACAGAGT
ACTTGTCTGGGATGCTCCAGGACATGACTTTGATCCATGGCACTGTAGAC
AAAGCATGTTTTTGGAGGCATGTATTTTCTTTTGAATGATTGCACACAGC
ACACTGGAGATAAGAGTGTACTTCACAGCTTCTTACCTTTCCTGGTGCAT
GGGAGAATTTCAAGCAGGTCATGTTAAAAGTAATGTAACCATGTTTTAAA
TGCATTGAAGTTTCCTCTGTTTCAAATTCAAGTATTCCCCATGTGCCTTG
AACCAAATTCTCTGGCCTGAATGCTCAAAAGAGCCAGCTTGGCTATCAAT
GCCTGGCTCCCATTGGTTCCTGGGCTGTGCATACGTGGGTTGTACAAACT
GCACATTGGTGGATCATGAAGGCAGGGTGCTGATGTGCACATACATGCCT
GCATCTCCCCAGCAGAGCAGGATAATGATTTCCATGGAAAGGCAATGCAA
TCTGAAGCTGTGTTCACGTCCAGGTGCTAGTGATAGCCAGGGAAGAAGCC
GGGAAGGCCTTATTAGAGACCTCTTACTTCAGCCATGAAGGTGACTTTTT
ACTTCAGCCATTGAAGGTGACTTTTTTCCTGGAGGAATCGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_i02.g1 MSMg01no315_i02.g1 CHROMAT_FILE:
MSMg01no315_i02.g1 PHD_FILE: MSMg01no315_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:59 2005
         (535 letters)



>mm_chr18_4622811_4623745
          Length = 935

 Score =  973 bits (503), Expect = 0.0
 Identities = 527/535 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagataagactgataaatgtgttgtaattcctggaaatgctatgatcatacctagggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 735 ttcagataagactgataaatgtgttgtaattcctggaaatgctatgatcatagctagggt 676

                                                                       
Query: 61  gaagatcagtgacagagtacttgtctgggatgctccaggacatgactttgatccatggca 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 675 gaagatcagtgacagagtacttgtctgggatgctccaggacatggctttgatccatggca 616

                                                                       
Query: 121 ctgtagacaaagcatgtttttggaggcatgtattttcttttgaatgattgcacacagcac 180
           ||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||
Sbjct: 615 ctgtagacaaagcatgtttctgggggcacgtatcttcttttgaatgattgcacacagcac 556

                                                                       
Query: 181 actggagataagagtgtacttcacagcttcttacctttcctggtgcatgggagaatttca 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 555 actggagataagagtgtacttcatagcttcttacctttcctggtgcatgggagaatttca 496

                                                                       
Query: 241 agcaggtcatgttaaaagtaatgtaaccatgttttaaatgcattgaagtttcctctgttt 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 495 agcaggtcatgttaaaagtaatgtgaccatgttttaaatgcattgaagtttcctctgttt 436

                                                                       
Query: 301 caaattcaagtattccccatgtgccttgaaccaaattctctggcctgaatgctcaaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 caaattcaagtattccccatgtgccttgaaccaaattctctggcctgaatgctcaaaaga 376

                                                                       
Query: 361 gccagcttggctatcaatgcctggctcccattggttcctgggctgtgcatacgtgggttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gccagcttggctatcaatgcctggctcccattggttcctgggctgtgcatacgtgggttg 316

                                                                       
Query: 421 tacaaactgcacattggtggatcatgaaggcagggtgctgatgtgcacatacatgcctgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tacaaactgcacattggtggatcatgaaggcagggtgctgatgtgcacatacatgcctgc 256

                                                                  
Query: 481 atctccccagcagagcaggataatgatttccatggaaaggcaatgcaatctgaag 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atctccccagcagagcaggataatgatttccatggaaaggcaatgcaatctgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)