Query= MSMg01no316_j17.b1 MSMg01no316_j17.b1 CHROMAT_FILE:
MSMg01no316_j17.b1 PHD_FILE: MSMg01no316_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:23 2005
(637 letters)
>mm_chr18_24141968_24143004
Length = 1037
Score = 1185 bits (613), Expect = 0.0
Identities = 631/637 (99%)
Strand = Plus / Minus
Query: 1 gattacctgactgactgattaagatcgtttgacttcaacgctagtgcttttttgcgagct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 821 gattacctgactgactgattaagatcgtttgacttcaacgctagtgcttttttgtgagct 762
Query: 61 acgtcactacttgaaacctgctaactgccgtgggaatgtttctcagtttgtattaggtac 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 acatcactacttgaaacctgctaactgccgtgggaatgtttctcagtttgtattaggtac 702
Query: 121 ctgaccgtgttgatcagtgcatctttgaaattattttttgattatggcacatgtaactat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ctgaccgtgttgatcagtgcatctttgaaattattttttgattatggcacatgtaactat 642
Query: 181 atatgtatgtatgtgcatattatatgcacacatacttatatatacatgtgcatatatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 atatgtatgtatgtgcatattatatgcacacatacttatatatacatgtgcatatatatt 582
Query: 241 ttcagtattataatcctgtatataacttacagtgtcatgtgattcattgggttgagtgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttcagtattataatcctgtatataacttacagtgtcatgtgattcattgggttgagtgat 522
Query: 301 agaaatacagtagtgagccaaaacaatgtagtttgtgtagtcatggaccacaccagaagt 360
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 521 agaaatacagtagtgagccaaaacaatgtagtttgtgtagtcatggacaagaccagaagt 462
Query: 361 cacattaagatgtgtgaattaatttatgtattttatttatgtgtgtgagcccgtgtgagt 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cccattaagatgtgtgaattaatttatgtattttatttatgtgtgtgagcccgtgtgagt 402
Query: 421 ttatgtggatcatgtgcatgggagtccttgaaactagagtaatagatgggtgtgagccac 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 401 ttatgtggatcatgtgcatgggagtccttggaactagagtaatagatgggtgtgagccac 342
Query: 481 tatgtgggtgctaggaactgagcctgggttctttgtaagagcaataagtgtgcttaacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tatgtgggtgctaggaactgagcctgggttctttgtaagagcaataagtgtgcttaacca 282
Query: 541 tctctagttcaccttccccataccagcacagtgtagttcttgacaaaaagccaagtgctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tctctagttcaccttccccataccagcacagtgtagttcttgacaaaaagccaagtgctt 222
Query: 601 tgagagaaatgcagatccctttacccatgtcttttat 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgagagaaatgcagatccctttacccatgtcttttat 185
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_j17.g1 MSMg01no316_j17.g1 CHROMAT_FILE:
MSMg01no316_j17.g1 PHD_FILE: MSMg01no316_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:24 2005
(542 letters)
>mm_chr18_23976789_23977730
Length = 942
Score = 410 bits (212), Expect = e-118
Identities = 304/354 (85%), Gaps = 45/354 (12%)
Strand = Plus / Plus
Query: 1 acacctataactaaaacaagagaaggagagcaatgaaatactgcaac-ctctgtgtgtgt 59
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 172 acacctataactaaaacaagagaaggagagcaatgaaatactgcaacgctctgtgtgtgt 231
Query: 60 gagtacacatgtataca--------cgcgcgcacacacacacacgcacaca--------- 102
|||| |||| | ||||| ||||||||||||||||||| ||||||
Sbjct: 232 gagtgcacacgcatacacgcacgcgcgcgcgcacacacacacacacacacacacacacac 291
Query: 103 -----------cgcactcatgcatgagtatatctatgtgtgtgtactcatccaagagcat 151
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 acacacacatgcgcactcatgcatgagtatatctatgtgtgtgtactcatccaagagcat 351
Query: 152 gtaaatgctgtaacttttgacctgtaagaagactgaatagagtaaagccaagaaatactg 211
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 352 gtaaatgctgtaacttttgacctgtaagaagactgaagagagtaaagccaagaaatactg 411
Query: 212 ccgatctcctttcttcctccctccctgcctccctcctttcctttcctttcctttcctttc 271
||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |
Sbjct: 412 ccgatctcctttcttcctccctccctgcctccctcctttcctt-cctt-cctt-cctt-c 467
Query: 272 ctttcctttcctttcctttcct--cttcctttcct--cttcctttcct-cttcc 320
||| |||| |||| |||| ||| ||||||| ||| |||||| ||| |||||
Sbjct: 468 ctt-cctt-cctt-cctt-ccttccttcctt-ccttccttcct--cctgcttcc 514
Score = 159 bits (82), Expect = 6e-43
Identities = 108/118 (91%), Gaps = 5/118 (4%)
Strand = Plus / Plus
Query: 425 tcttcctttccccttccttccttccttcc-ttccttccttccttccttccttccttcctt 483
||||||| |||| ||| || ||| ||| ||||||||||||||||||||||||||||||
Sbjct: 423 tcttcct---ccctccctgcc-tccctcctttccttccttccttccttccttccttcctt 478
Query: 484 ccttccttccttccttccttccttcctcctgtttcccacctctggtatggttgaatta 541
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 479 ccttccttccttccttccttccttcctcctgcttcccacctctggtatgggtgaatta 536
Score = 72.3 bits (37), Expect = 9e-17
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 447 tccttccttccttccttccttccttccttcc-ttccttccttccttccttccttccttcc 505
||||| |||||| ||| ||| || ||| ||| ||||||||||||||||||||||||||||
Sbjct: 418 tcctttcttcctccctccctgcc-tccctcctttccttccttccttccttccttccttcc 476
Query: 506 ttcct 510
|||||
Sbjct: 477 ttcct 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 3
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
