Query= MSMg01no317_f09.b1 MSMg01no317_f09.b1 CHROMAT_FILE:
MSMg01no317_f09.b1 PHD_FILE: MSMg01no317_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:20 2005
(692 letters)
>mm_chr18_57754228_57755319
Length = 1092
Score = 1236 bits (639), Expect = 0.0
Identities = 675/687 (98%)
Strand = Plus / Plus
Query: 6 gaattccattttttcctgtaacatgtttaacaaagacctcacacattcctggggcaaatt 65
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 206 gaattccattttctcctgtaacatgtttaacaaagacctcacacattcctggggcaagtt 265
Query: 66 cattgcactttaccctatgtctgtgcaaagggctaatgagcaccaacagacagatattct 125
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cattgcactttagcctatgtctgtgcaaagggctaatgagcaccaacagacagatattct 325
Query: 126 tgtgcaccactgtccatttatcagtttccctgctactctggagaatatgaatgaccctta 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtgcaccactgtccatttatcagtttccctgctactctggagaatatgaatgaccctta 385
Query: 186 cgtgtgaccccaaaagcttgcttgtcatcctagtcattgccctcttcacctagacagcat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cgtgtgaccccaaaagcttgcttgtcatcctagtcattgccctcttcacctagacagcat 445
Query: 246 ggcttagtcctgataaaggatactggccagccacgtcaaatggccactctcaatagcacc 305
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agcttaatcctgataaaggatactggccagccacgtcaaatggccactctcaatagcacc 505
Query: 306 aagttcctcagaccagcttagaatgcaagcagaaaagactaaaataataaattctgaaga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagttcctcagaccagcttagaatgcaagcagaaaagactaaaataataaattctgaaga 565
Query: 366 ctacccacccactctgtgtagtgagctggcctgaaaaaatcttttcaatagtcccatctt 425
||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctacccattgattctgtgaagtgagctggcctgaaaaaatcttttcaatagtcccatctt 625
Query: 426 tttgtgttcaaggaaaaaaaattatctttcagaccagagtttataatccctagacccagt 485
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttgggttcaaggaaaaaaaattatctttcagaccagagtttataatccctagacccagt 685
Query: 486 ctttttctaaccttgcacactcatttgaccaatactgaaaatgacttgtgcccgcatctg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctttttctaaccttgcacactcatttgaccaatactgaaaatgacttgtgcccgcatctg 745
Query: 546 tggcgttgtgacctgttctgcagaagtatgccacactagagcagcattcggttgcagatg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tggcgttgtgacctgttctgcagaagtatgccacactagagcagcattcggttgcagatg 805
Query: 606 ttttaccactggtctgccccaagggtgccagataatgactgcagttggaagagagctctg 665
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 806 ttttaccactggtctgccccaagggtgccagataatgactgcagttggaggagagctctg 865
Query: 666 gttcttaacctgttacctacgtctgtg 692
|||||||||||||||||||||||||||
Sbjct: 866 gttcttaacctgttacctacgtctgtg 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_f09.g1 MSMg01no317_f09.g1 CHROMAT_FILE:
MSMg01no317_f09.g1 PHD_FILE: MSMg01no317_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:20 2005
(284 letters)
>mm_chr18_57898152_57898835
Length = 684
Score = 431 bits (223), Expect = e-125
Identities = 257/279 (92%), Gaps = 17/279 (6%)
Strand = Plus / Minus
Query: 1 tcttaatgtgggaatagaatgggagaaatacagagagaaggatgtaccaataatctagag 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 300 tcttaatgtgggaatagaatgggagaaatacagagagaaggatgtatcaataatctagag 241
Query: 61 ggggagttctttttgatacagactcataaaaggtggctacatttatttattaatatttat 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggagagttctttttgatacagactcataaaaggtggctacatttatttattaatatttat 181
Query: 121 ttacttatttttagccaaggttccatgagatttggaagctctggttaacagatatttttt 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 180 ttacttatttttagccaaggttccatgagatttggaagccctggttaacagatatttttt 121
Query: 181 ttttacagatattttttaaatgatacttgttaagaattaatatgcatagaaaggtttata 240
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 120 -----------------aaatgatacttgttaagaataaatatgcatagaaaggtttata 78
Query: 241 ttcctagtgtaagttatacccattctataataagaaagt 279
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 77 ttccaagtgtaagttatacccattctataataagaaagt 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
