BAC Information

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BAC

Clone NameMSMg01-317F20
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317F20.T7 (MSMg01no317_f20.b1)MSMg01-317F20.TJ (MSMg01no317_f20.g1)
ACCAG437453AG437454
length730726
length of high quality
(start - end)
373 (50 - 422)341 (79 - 419)
definitionCHROMAT_FILE: MSMg01no317_f20.b1 PHD_FILE: MSMg01no317_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:22 2005CHROMAT_FILE: MSMg01no317_f20.g1 PHD_FILE: MSMg01no317_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAGGGTAACTCATCACTCAGGGACTTCAGGCAGAAAACTA
GCCAGTCAGCCTCTGGATAGACAAGGCTCAACAGTTCAGAGAACCAGGCC
ATCGCAAATAGTTCACAGACCTGCAAGGAAGACATGCAGATCCCTGCCCC
CCACCCCACCCCTCCCTCAGCCCCACCCAAACATAGGGAGAAAAGGCAGT
GTGGGGGAGGGGGAGGTGCTGTGAGCGAATTTAGATAGCTCGAAGAAATA
AATAGCTGGAGACTTCATTCATTTACTTATTTTATTGAGTATATGGTGAA
AGAGGGAAAATGGTTCTTAAAGGAGGGAGGGCAGACTGTCTTCCCATGCT
GGGATCATTCATGCCTTAAGAACACCCGANGAGGCTGGAGAGATGGCTCA
TCGGTTTAGAGCCCTGACTGCTCTTCTGAAGATCCTGAGTTCAAATCCCA
GCAACCACATGGTGGGTGTTTCTCTTCCACCCTTTATGTTTTTTCGTGCT
TTTGGTTATTTGTGTTTTATTGCTTTTACCTTTGTTTTACATTTATTATT
AATTTATTCTATTTATCATTAGGTTTTCTTACCCTTGCTTTTTTCCTTAT
TTTTTCTCTTACCTTTTTTTCCTATTTTTGCATTGCCCTTTTCTTTTCGT
CCCCTTTTTCTTCCATTTTTTTTTTCTCTC
NTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAG
GTCCACATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCT
CATACCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACA
GAAAGAGGAATGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCACCC
TGTCAGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGG
TTTGGAATTTCTACTTCATGTTTTTTTTTTTTTTTTTTTGAGACAGGGTT
TCTCTGTATAGCCCTGGCTGTCCTGGCACATTGGATTTTATAACAGACTT
TGTGTGTGTGTGTGTGTGCGCGCGAGTGTGTGTAATACTTCTCCTGTGAT
TGCCGTAACTTGCAATCTAGTGGGCTTATGTTTGATTCCTGTAATCTTTT
TTTCTAATTCTTTTTCCTTTTTATATTTTATTTTATTTTATTTTATTTTA
TTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTT
ATTTATTTTANTNNNATTTTCTTATTTTATTNNTTTNTATATTTATTTTA
ATATATATTATTATTTTTTTTTTTTATATTTTTTTTTAATTTTTTTTTAT
TTTATTATTTTTTTTTTATTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_f20.g1 MSMg01no317_f20.g1 CHROMAT_FILE:
MSMg01no317_f20.g1 PHD_FILE: MSMg01no317_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:22 2005
         (341 letters)



>mm_chr18_40467476_40468215
          Length = 740

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 740
Length adjustment: 9
Effective length of query: 332
Effective length of database: 731
Effective search space:   242692
Effective search space used:   242692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)