Query= MSMg01no317_j17.b1 MSMg01no317_j17.b1 CHROMAT_FILE:
MSMg01no317_j17.b1 PHD_FILE: MSMg01no317_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:38 2005
(697 letters)
>mm_chr18_62334414_62335510
Length = 1097
Score = 1257 bits (650), Expect = 0.0
Identities = 684/700 (97%), Gaps = 11/700 (1%)
Strand = Plus / Minus
Query: 4 ggaattccaaa--taatctcgttaaaatttcagctatgaaggttaacgtcaattctcagc 61
|||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 ggaattcctaatgtaa-cttgttaaaatttcagctatgaaggttaacgtcaattctcagc 858
Query: 62 taaaagaggcttttgcagcgtttgagtccctttaggaatgctttaagcttaagaactttg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 taaaagaggcttttgcagcgtttgagtccctttaggaatgctttaagcttaagaactttg 798
Query: 122 atccatttttaggggcttggaaaacaagaacaccaggaccctcctgtgatcccttgtttt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atccatttttaggggcttggaaaacaagaacaccaggaccctcctgtgatcccttgtttt 738
Query: 182 ttcacctctcatgtgggtttgtgttccctccgtcccttcgagtctcctgtttgttgacac 241
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 737 ttcacctctcatgtgggtttgtgttccctccgtccctccgagtctcctgtttgttgacac 678
Query: 242 gctagttacataaggtttgtgttggattcgtcaccctaaagttttctttgcctggacagc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gctagttacataaggtttgtgttggattcgtcaccctaaagttttctttgcctggacagc 618
Query: 302 aagttctcagagtctgtcaaatgagaaccttatcctgagatgcaagctgacaggtgtgaa 361
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 617 aagttctcagagtctgtcaaatgagaactttatcctgagatgcaagctgacaggtgtgaa 558
Query: 362 tggtggcggcacaccccggg----cctgcctgggagataattactgaggcaaagaatcta 417
||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 557 tggtggcgggaca----gggtgggcctgcctgggagataattactgaggcaaagaatcta 502
Query: 418 ggaggggaaaggagcctggaaataggagctgcccttacatgctgctgagaatgtttgtga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaggggaaaggagcctggaaataggagctgcccttacatgctgctgagaatgtttgtga 442
Query: 478 tggaggacttgctgccaaatcctgtacaccagaaagagtcctctcctcgggtcactgtag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaggacttgctgccaaatcctgtacaccagaaagagtcctctcctcgggtcactgtag 382
Query: 538 cacacctgctgggtgcatgtgagagaagcctgagcttgtgattttttgaccttctgggcc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacctgctgggtgcatgtgagagaagcctgagcttgtgattttttgaccttctgggcc 322
Query: 598 accatagagtactgagctgttatctgcattgaaattgaactgaaggccggggttacgtta 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accatagagtactgagctgttatctgcattgaaattgaactgaaggccggggttacgtta 262
Query: 658 ggcgactgttgagcactgtatcatctttacaaaaccttca 697
||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcgactgttgagcactgtatcatctttacaaaaccttca 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_j17.g1 MSMg01no317_j17.g1 CHROMAT_FILE:
MSMg01no317_j17.g1 PHD_FILE: MSMg01no317_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:38 2005
(659 letters)
>mm_chr18_62274226_62275284
Length = 1059
Score = 1181 bits (611), Expect = 0.0
Identities = 647/659 (98%)
Strand = Plus / Plus
Query: 1 tctgcccgtttctacatctgggctactctatggctagtgctgcagacatggcctttgcct 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcccgtttttacatctgggctactctatggctagtgctgcagacatggcctttgcct 260
Query: 61 catggctcctgtcaaagttctgacatatgaacatcgatgcaaaaatgctcaataaaattc 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 catggctcctgtcaaagttctgacatatgaacatcaatgcaaaaatgctcaataaaattc 320
Query: 121 ccgctaactgaacccaagaacacatcaaaacaatcatccatcctgaccaagtaggtttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ccgctaactgaacccaagaacacatcaaaacaatcatccatcctgaccaagaaggtttca 380
Query: 181 ttccagggatacagatcactcacagatgaagaactaaccaagtaccactttctccatttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccagggatacagatcactcacagatgaagaactaaccaagtaccactttctccatttc 440
Query: 241 tagaaccacacatgatataaggcctgcctacattctccaactgactctattaaatgtgtc 300
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 tagaaccacacatgatgtaaggcctgcctacattctccaactgactctaggaaatgtgtc 500
Query: 301 ctcatctttgctcccaccagctccacagaacttcaaggctacttccccgcacacgccatt 360
|||||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||
Sbjct: 501 ctcatctttgctcccaccagctccacggaacttcaaggctacttccttggagacgccatt 560
Query: 361 ttggttgttcatgagcaatcaggtgtccttattactttctcagaaaacatttctggcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggttgttcatgagcaatcaggtgtccttattactttctcagaaaacatttctggcttc 620
Query: 421 cctcttaataccctccacatcctttaaaactacatttgcttcccccaaacacttccttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcttaataccctccacatcctttaaaactacatttgcttcccccaaacacttccttct 680
Query: 481 ctttttcttttcactagaaatcaaactacaaaggcctgtctgtcttgtcagtatgtatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttttcttttcactagaaatcaaactacaaaggcctgtctgtcttgtcagtatgtatcc 740
Query: 541 agggcccagcacaacatctgtttgtaggaggtactggaggaacgtgtggataaaatgatg 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 agggcccagcacaacatctgtttgtaggaggtactggaggaacgtgttgataaaatgatg 800
Query: 601 ggtacccaagtctttcatctgtacaacttacctggagaccagtgaccttctcccacgat 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggtacccaagtctttcatctgtacaacttacctggagaccagtgaccttctcccacgat 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
