BAC Information

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BAC

Clone NameMSMg01-317P11
Chromosome18 (Build37)
Map Location 77,798,631 - 77,798,996
singlet/doubletsinglet
Overlap geneRnf165
Upstream geneEG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1
Downstream gene8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317P11.T7 (MSMg01no317_p11.b1)MSMg01-317P11.TJ (MSMg01no317_p11.g1)
ACCAG437890AG437891
length737863
length of high quality
(start - end)
382 (35 - 416)154 (72 - 225)
definitionCHROMAT_FILE: MSMg01no317_p11.b1 PHD_FILE: MSMg01no317_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:03 2005CHROMAT_FILE: MSMg01no317_p11.g1 PHD_FILE: MSMg01no317_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCG
GAATTCTGAAACGCCGGCCATCAGGTGAGAAAAGTAAAACCTTAGAGTCG
GTTAGTATTTGTCTTCTGGAGGAAGCGAGAGTTATCAGGCAGTTTGTTTT
GATTAGGGGAGATGAAAGAGTTATTTTGCTTTACCACACTTAGGTCTCAC
ACAAACCCAAAAGAAAATAAATTAAAGGAAAACCAGGGAACCTTCAAGGG
ACTGGCTTCACAGACCTGCATATCTCCTTTTGAACACATCAGAGCACAAG
CCTCCGCCAGGAACATCCTTGTGTGCCCGTGTCACAGTAAATCAGTTCAG
CTTTTCCACCCTGGCCAGGGAGAAAAGAACAAAGGGCCCGAGCAGAGGGG
GCAGCCCTCTGGGGTTGGCGCCGTCTCACGAGGCCACAAAGATAGCAAAG
AAGCAGTGGTCAGACAACAGTAAAATGGCCATCCTCCCTGAGGGGACCAG
GGGAGGACCTCCCAGAAGACAGCCTAGAGGAGCCAGGACTAAGCACATGG
CCAAGAGAAACAGCTTCGAATGATGACCCCTTGAAGGAACCATGAATTTC
TTTAATCAACTGATTTCCTCTGGTGTCTAAAACGCCTCATTTAACAAGGC
TTGTTCTGGGCTGAAATTGAATAGATGTAATTGACCAATGCTTGAATTTG
GGTTCCACTGGGGGTAGGGGCGTGGGAGGGAGATACN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTACAAAAAAATTCACAGAGATCTGCTTGCTTCTTCCTC
TCAAATTCTGGGATTAAAGGTGTGCACTCATATGCCCAGCTTAGATTTTT
TTTATTAATATTTTTAGTTGTGTGTGTGAGTATGCTTTTTTGTGTGAGTG
TGTGTGTGTGAGGGGGGAGGTTCTTCTTTCCTCCTTTTTCCTTTTTTTTT
TTTTCCTCTCTCTTTTTTCCCCCTTTCTTCTTCCTTTCNCCCCCCTTCTC
TCCCCCCCCCCTTTTTTCTTTTTTTCACCNCNNNCNCCCNNNACCCCCNC
ACACCCNCCCTTTTTTTTTTTTTCCCCCCCCCCCCCCCCTCTTTATTATT
TTTTACTTTTCTTTTTATATTATGGGGGGGCCCCCCCCCCTGTTAANAAA
TAATATAGTTTTTTTTTCCCCCTGTCTCCCCCTCTTTCCCCCTCCCCCTT
CCCCCACCTCTTATATTCTCTTTTTTTCTTCTCTTTCTTCCTAGTCTGTA
TCCCCTATTCTCCCCCTTTTCTTTTATTATCCCCCCTTTCTCCCTTTTTT
TCCTCCTCTTCTCCCTTTATTTGTTAATTCTGCGCCCCCTATTTCCTTCC
TTCTTTTTCCCTCCGCTTCATTACCCCCCTCTCCTCCGTTTTGCCCCCCC
TCCCTTTTATTTCTCCTTATCCTTATCCCCCTTTCTTTCTTTTTTTTCTT
TCCTTACTCCCTTTATAATTCCCTCCCGCTTTTCCCCCTTCTTTTTTTTC
CCTCTCTTCTCTCCCTTCTCCCTCTTACTCCCCCGTCTCCCTCCCTTCTT
TCCCTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_p11.b1 MSMg01no317_p11.b1 CHROMAT_FILE:
MSMg01no317_p11.b1 PHD_FILE: MSMg01no317_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:03 2005
         (382 letters)



>mm_chr18_77798415_77799196
          Length = 782

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattctgaaacgccggccatcaggtgagaaaagtaaaaccttagagtcggttagtattt 76
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctgaaacgctggccatcaggtgagaaaagtaaaaccttagagtcggttagtattt 276

                                                                       
Query: 77  gtcttctggaggaagcgagagttatcaggcagtttgttttgattaggggagatgaaagag 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtcttctggaggaagcgagagttatcaggcagtttgttttgattaggggagatgaaagag 336

                                                                       
Query: 137 ttattttgctttaccacacttaggtctcacacaaacccaaaagaaaataaattaaaggaa 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttattttgctttaccacacttaggtctcacacaaacccaaaagaaaataaattaaaggaa 396

                                                                       
Query: 197 aaccagggaaccttcaagggactggcttcacagacctgcatatctccttttgaacacatc 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaccagggaaccttcaagggactggcttcacagacctgcatatctccttttgaacacatc 456

                                                                       
Query: 257 agagcacaagcctccgccaggaacatccttgtgtgcccgtgtcacagtaaatcagttcag 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agagcacaagcctccgccaggaacatccttgtgtgcccgtgtcacagtaaatcagttcag 516

                                                                       
Query: 317 cttttccaccctggccagggagaaaagaacaaagggcccgagcagagggggcagccctct 376
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttttccaccctggccagggagaaaagaacaaagggcccgagcagagggggcagccctct 576

                 
Query: 377 ggggtt 382
           ||||||
Sbjct: 577 ggggtt 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)