BAC Information

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BAC

Clone NameMSMg01-319F20
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,898
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319F20.T7 (MSMg01no319_f20.b1)MSMg01-319F20.TJ (MSMg01no319_f20.g1)
ACCAG438907AG438908
length719725
length of high quality
(start - end)
245 (71 - 315)301 (72 - 372)
definitionCHROMAT_FILE: MSMg01no319_f20.b1 PHD_FILE: MSMg01no319_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:41 2005CHROMAT_FILE: MSMg01no319_f20.g1 PHD_FILE: MSMg01no319_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXCTAAATGCCGCAGGGGCGCGGAATTC
TCTGAACTAACGTCATATCAGGTCCACATTTGCTCTGGCTCTGGCAACTG
ACTGAACCAAACAATTACCCTCATACCTAGAACTTTGGAAATGGTAATGG
AGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCACTAGTACA
CTTTCACTAGAGCCTCACCCTGTCAGCAGTTTAGGAATTTGTAAAGTCTT
TCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGTTTTTTTTTT
TTTTTTTTTGAGACAGGGTTTCNCTGNATAGCCCTGGCTGTCCTGGCACA
TTGGATTTTTTTTCCCACCCCCGCGCCCGTGTGTGTGTGTGTGTGTGTGT
GTGTAATACTTCCCCCCCCAAGAAAAAAAAAGCAATCTAGGGGGCGTATG
TTTGATTCCTGTAATCTTTTTTTCTAATTCTTTTTCCTTTTTATATTTTA
TTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTAATTTA
TATTATCCTACTGCACTTCCTTCAGACCCTCCAACACGCTTATAACTAAT
TATAGGTTTCATTCATTCTCTGCTTTACAAAAAAAAAGAGCGGAGACCCT
TTTTTTTTTTTTTTTTTAAACAGAGAAGGGACCTCCACAACATGATAAAC
GTTAATCTAATATACTTAT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGGGAAATCATCACTCAGGGACTTCAG
GCAGAAAACTAGCCAGTCAGCCTCTGGATAGACAAGGCTCAACAGTTCAG
AGAACCAGGCCATCGCAAATAGTTCACAGACCTGCAAGGAAGACATGCAG
ATCCCTGCCCCCCACCCCACCCCTCCCTCAGCCCCACCCAAACATAGGGA
GAAAAGGCAGTGTGGGGGAGGGGGAGGTGCTGTGAGAGAATTTAGATAGC
TCGAAGAAATAAATAGCTGGAGACTTCATTCATTTACTTATTTTATTGAG
TATATGGTGAAAGAGGGAAAATGGCTCAAAAAGGAGGGAGGGCAGACTGT
CTTCCCATGCTGGCCCCCCCCCTGCCCCAANAANAAATGTAGGAGGCTGG
AGAGATGGCTCATCGGTTTAGAGCCCTGACTGCTCTTCTGAAGATCCTGA
GTTCAAATCCCAGCAACCACATGGTGGGTGNNTCNCNNNNNNNCTTCCCC
TTCCCCTCTCCCCCTTCTCTCNTTCTCCCCCCACCTCNCCCCTCTCCCTT
CCTTACTTTATACTACTCCCCTNTTACAACCACTATTCTCCCTTTTCCCT
ATTCCCTCTCTTCTTTTTTTTCACCTTTATTTCCACTTTACCATATATTA
CTTTCCTTGTTGTTGTGTTTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_f20.b1 MSMg01no319_f20.b1 CHROMAT_FILE:
MSMg01no319_f20.b1 PHD_FILE: MSMg01no319_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:41 2005
         (245 letters)



>mm_chr18_40467476_40468120
          Length = 645

 Score =  279 bits (144), Expect = 1e-79
 Identities = 204/224 (91%), Gaps = 2/224 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtccacatttgctctggctctggcaactgactgaaccaaacaattaccctcatacctag 60
           ||||||| |||||||||||||||||||||||||||||||||||| ||  |||||||||||
Sbjct: 423 ggtccacctttgctctggctctggcaactgactgaaccaaacaa-taggctcatacctag 365

                                                                       
Query: 61  aactttggaaatggtaatggagttgataacacaccctaacagaaagaggaatgctccact 120
           | ||| | |||||||||||||||||| ||||||| |||||||||||||||| ||||||||
Sbjct: 364 atcttcgaaaatggtaatggagttgaaaacacactctaacagaaagaggaaggctccact 305

                                                                       
Query: 121 cactagtacactttcactag-agcctcaccctgtcagcagtttaggaatttgtaaagtct 179
           |||||| | ||||||||||| |||||| ||||| ||||||||||||||||||||||| | 
Sbjct: 304 cactagaagactttcactagaagcctcgccctgccagcagtttaggaatttgtaaagcca 245

                                                       
Query: 180 ttctggacaatatttaaatggtttggaatttctacttcatgttt 223
            ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 244 atctggacaatatttacatgatttggaatttctacttcatgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)