Query= MSMg01no319_j20.b1 MSMg01no319_j20.b1 CHROMAT_FILE:
MSMg01no319_j20.b1 PHD_FILE: MSMg01no319_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:59 2005
(290 letters)
>mm_chr18_46860747_46861436
Length = 690
Score = 545 bits (282), Expect = e-160
Identities = 288/290 (99%)
Strand = Plus / Plus
Query: 1 ctgtggttcatgtgcagtgccaaacagataggtggtggtgcctgtgtgcctcacggcatg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ctgtggttcatgtgcagtgccaaacagataggtggtggtgcctgtgtgccccacggcatg 260
Query: 61 tgtagccatcctgcccctgtatctgaactcaaaatggagacggatgccaccagtaaaatg 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagccattctgcccctgtatctgaactcaaaatggagacggatgccaccagtaaaatg 320
Query: 121 aattaactcaggcaagacacagcctgacagtggcttacacagccagcatgtatgaacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaactcaggcaagacacagcctgacagtggcttacacagccagcatgtatgaacata 380
Query: 181 gacctggcctgagggcatggcctgagctccacgggctcacaaagaaactctcaggtggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacctggcctgagggcatggcctgagctccacgggctcacaaagaaactctcaggtggct 440
Query: 241 ttgagaatgtctagcctaacacagctgccactgcttcatgacctgcctag 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgagaatgtctagcctaacacagctgccactgcttcatgacctgcctag 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no319_j20.g1 MSMg01no319_j20.g1 CHROMAT_FILE:
MSMg01no319_j20.g1 PHD_FILE: MSMg01no319_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:59 2005
(296 letters)
>mm_chr18_47038722_47039417
Length = 696
Score = 429 bits (222), Expect = e-125
Identities = 287/342 (83%), Gaps = 53/342 (15%)
Strand = Plus / Minus
Query: 1 gaaaccaaaaccaggttgtcaggctcacacagcaagttcctttaccttctaacccacatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaaaccaaaaccaggttgtcaggctcacacagcaagttcctttaccttctaacccacatg 391
Query: 61 ccacctgcct---------------------------------------taccagccacc 81
|||||||||| |||||||||||
Sbjct: 390 ccacctgccttaccagccacatgccacaccagccacatgccacctgccataccagccacc 331
Query: 82 tgccacaccaaccaccttctacctggcacaccagccaactgccacatcagccatttgtca 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgccacaccaaccaccttctacctggcacaccagccaactgccacatcagccatttgtca 271
Query: 142 cacaa-------gccacctgccacatcagccaccttccatctgccacaccaaccacctgc 194
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cacaagccacctgccacctgccacatcagccaccttccatctgccacaccaaccacctgc 211
Query: 195 cacatcagccatctgccacaccagccacctgccacaccaaccaccttccacctgccacat 254
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 cacatcagccacctgccacaccagccacctgccacaccaaccaccttccacctgccacat 151
Query: 255 cagccacctgccatctgccacaccaaccacctaccacaccaa 296
||||||| |||||||||||||||||| |||||||||
Sbjct: 150 cagccac-------ctgccacaccaaccacctgccacaccaa 116
Score = 128 bits (66), Expect = 5e-34
Identities = 163/204 (79%), Gaps = 22/204 (10%)
Strand = Plus / Minus
Query: 54 ccacat--gccacctgccttaccagccacctgccacaccaaccaccttctacctggcaca 111
|||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 211 ccacatcagccacctgccacaccagccacctgccacaccaaccaccttccacctgccaca 152
Query: 112 ccagccaactgccacatcagccatttgtcacac-aagccacctgccac-----at--cag 163
|||||| |||||||| || ||| || ||||| || |||||| |||| || |||
Sbjct: 151 tcagccacctgccacaccaaccacctgccacaccaa-ccaccttccacctgccataccag 93
Query: 164 ccaccttccatctgccacaccaaccacctgccacatcagccatctgcca--caccagcca 221
|||| || ||||||||||||||||||||| | ||| |||||| ||| | |||
Sbjct: 92 ccac-----at--gccacaccaaccacctgccacctt--ccacctgccatacactatcca 42
Query: 222 cctgccacaccaaccaccttccac 245
|||| |||||||||||||| ||||
Sbjct: 41 cctgtcacaccaaccacctgccac 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
