BAC Information

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BAC

Clone NameMSMg01-319K13
Chromosome18 (Build37)
Map Location 22,032,357 - 22,032,621
singlet/doubletsinglet
Overlap gene4921528I01Rik
Upstream geneD030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14
Downstream geneLOC546708, LOC100040547, Asxl3, Nol4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319K13.T7 (MSMg01no319_k13.b1)MSMg01-319K13.TJ (MSMg01no319_k13.g1)
ACCAG439116AG439117
length738734
length of high quality
(start - end)
289 (121 - 409)290 (122 - 411)
definitionCHROMAT_FILE: MSMg01no319_k13.b1 PHD_FILE: MSMg01no319_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:02 2005CHROMAT_FILE: MSMg01no319_k13.g1 PHD_FILE: MSMg01no319_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
TTTTATTCCCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGT
ATCCATTCCTCTGTTCCCGGACATCTGGATTCTTTCCAGCTTCTGGCTAT
TATAAATAGGGCTGCTATGAACATAGTGGAGCATGTGTCCTTATTAACAG
TTGGGGCATCTTCTGGGTATATGCCCCGGAGAGGTATTCATGGATCTACC
TGTAATACTATGTCCAGTTTCCTGAGGAACCGCCAGACTGATTTCCAGAG
TGGTTGTACCATCTTGCAATCCCACAAGCAATGGAGGAGTGTTCCTTTTT
CCCCACATCCTCACCAGCATCTGCTGTCACCTGCATTTTTGATCCTAGCC
ATTCTGACCGCCCCCACCAGGAATCTTGGGGTTGTTTTGATTTGCATTTC
CCTGATGACTAAGGATATTGAACATTTTTTCAAGTGCTTCTCAGCCACTC
AGTATTCCTCAGTTGAGAATTCTTTGCTTAGCTCTATATTCCATATTTAG
TGGGGTTATTTGAATTTCTGGAGTTCAGTTTCTTGAGCTCTTTGTATATA
TTGGATATTAGTCCCCTACCATATTTAAGATTGGTCAAAAATTCTTTCCC
AATCTGTTGTAGGCCTTTTTGTCGTATTGACGAATCCTTTTGCCCTACAT
AAACTCTGCAATATTAAGAAGCCCACATTTGTCTGATC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCCAGAAATTCTTAACATTAATTTAAAAGGAGAGGGGCTGAGTA
CTGGCTTTACATAACTCCCATGCTGGAATGTAAATATTAGTTTCTATTGT
TGTCTAACCACCAACAGTTTGGAGTTTGGTTATCATTATGATAATCTTCA
TTTTTCCATCATGTGGCTTATTTGTTCCTATAATGCTGCAATTATATATT
TTGTAAGTAGTACTTTAAGAAACATAAGCAAAAATGAAAGGAAATATCAG
GGTGACATCAAAATCATTAATTAATATTATTTGGTTATAGTTATACAGAA
GTCCTCTCTAATATTTAACTACCGCTCTAAACAGGGACCCTCAACTGACA
AACTGCCTCCACCCCACCGACCTGTAGGCCATTCTGTGGTGCATTTTCTT
GATTAATGATTTATGTGTGAGGACCGGATCCACTGCGCCTGGTACCTCTC
CTGAGTAGGTGGCCCTGGATGATCTAAGAGTCTAGCCTGATCAAGAGTGA
GCCAGCCACTAAACAGTAGCATCCATGGGTCCATGGAGTCTGCTTTCATT
CCTGCCTCCAGGTTCCTGTCTTGAGATCCTGCCTTGACTTCTTTCAGTGA
TATATTGTGATTAGGACATGTAAGTTAGATAAATCCTTTCCTCTAAAACG
TGTGCTTCTGCTCCAGCTTTTTTTCATAGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_k13.g1 MSMg01no319_k13.g1 CHROMAT_FILE:
MSMg01no319_k13.g1 PHD_FILE: MSMg01no319_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:02 2005
         (290 letters)



>mm_chr18_22032157_22032846
          Length = 690

 Score =  505 bits (261), Expect = e-147
 Identities = 264/265 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctggaatgtaaatattagtttctattgttgtctaaccaccaacagtttggagtttggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctggaatgtaaatattagtttctattgttgtctaaccaccaacagtttggagtttggtt 260

                                                                       
Query: 61  atcattatgataatcttcatttttccatcatgtggcttatttgttcctataatgctgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcattatgataatcttcatttttccatcatgtggcttatttgttcctataatgctgcaa 320

                                                                       
Query: 121 ttatatattttgtaagtagtactttaagaaacataagcaaaaatgaaaggaaatatcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatatattttgtaagtagtactttaagaaacataagcaaaaatgaaaggaaatatcagg 380

                                                                       
Query: 181 gtgacatcaaaatcattaattaatattatttggttatagttatacagaagtcctctctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgacatcaaaatcattaattaatattatttggttatagttatacagaagtcctctctaa 440

                                    
Query: 241 tatttaactaccgctctaaacaggg 265
            ||||||||||||||||||||||||
Sbjct: 441 aatttaactaccgctctaaacaggg 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)