BAC Information

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BAC

Clone NameMSMg01-320H01
Chromosome18 (Build37)
Map Location 5,369,426 - 5,369,539
singlet/doubletsinglet
Overlap genenone
Upstream genePapd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438
Downstream geneLOC100039442, Zeb1, EG664925, Arhgap12, Kif5b, LOC100039469, EG621100, LOC665028
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320H01.T7 (MSMg01no320_h01.b1)MSMg01-320H01.TJ (MSMg01no320_h01.g1)
ACCAG439671AG439672
length716948
length of high quality
(start - end)
114 (106 - 219)---
definitionCHROMAT_FILE: MSMg01no320_h01.b1 PHD_FILE: MSMg01no320_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:57 2005CHROMAT_FILE: MSMg01no320_h01.g1 PHD_FILE: MSMg01no320_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTCCTATACGGAGAGGATCCGCGGAATTCAACATATTTTATAAAAAA
TGTGGATGCTCATCAATGGCCCCTCCTCCCAGACACCTGATCTTCTCCCG
AAGCACTGCTATGGCCTAAGTGATGGCTGATGTTGGAGTGTTTACATACA
AGATCAAGGGAAGTTCCCAGCTTGGCTTCTGTAACTCTACTCTCAACCCT
ATTAAAGAAGGAATGAGTGCAGGAGAGAGGCCAGGCGGCAGGGCGGGGCA
GCAGGCCATGCCTGGATAATCCACGCCTGCGCAGCACTCACAGATATGAG
GAAAAGTATTTCTTTCATTACTTATTCTAATAATTTATTTTTTACCCCCC
CCCCCCCACCAAGTGTTTTTCACCATAACTTTTTGAAGACATGTTTCATG
AAAAAATCTTTTCTGAGCCTGCGTTTTGGAACTTTATCAAGAACACATGA
CTGCACTTCTCATTCGGAAGGCAAACTCCTTACTATACCCGTGAACTGTG
ATAGTCATCTATACTGTCCCTCATCCAAGATTACTCGGATAACTGGATAA
GGCGCCCAATTCTCTCCCTATTACATTCTCAAGTTCAGTGTGCTCTTCTA
ACATTAATTCTTTTTCTAGCATAATTTCTTATGTAGGGTCCCTCTTATTG
GACTTGTGTTTAAAAGATTCCTCCCCCGTTACTTGTTACACCAAAATGGA
AATATTAAATTGTCTT
TGGGATTATATGTTTGTATTAATACTCCATTTCCNCCTTAATCNNNCCCT
CGATGATAGTGGGAGGCCTGGAGGNCGCCGGTTCGGCACCGNAAGGNNGN
NNNANAGAATTANCAAAAGAGAGNNNANNNNANNNNNNGNNNNNNNNNNG
GNTAAANNGNNNGTTTTTTANCCGAAAAAGAAAGGAGAAAGNNGANANNG
GAGNANNNGAANANGGNANGGGGAGGNAGAGAGGAAAAAAGAAAGGAAAA
GAGAGGNNANGGGAAGGAGAAAAGAGGAGAAGGGAAAAAGAAGAAAGGGN
NAAAGGGAAAAAAAAGAATTTTGTATAAAGAAAGGGGGGTTGATTTGTAA
GAATATGTTGAGATAGAATTGTGATGTATAATGGAAGTGAAGGGTGTTTT
TTTTTTTTTTAAGAAGGAGGGGGGGGAGGGGGGAAAAGGAAAAAAAGAAT
TTTTTTTTTTTTTCACCCCCCCCCACACGGGAGGAGGAGAAAAAAGGTGT
GTGTGATTTGTGTTTTNTTTTCCCTATTAAAAAAAAAAAAAAAAAAAAAG
TGGTGGTGGTGGGTGGGTTGTTTTTTTATTTTATGGATGATGGGAGGATA
TATTATATAAATTTTTTTTGTTTAATAGAATTGTTTTTGGAGAATGTTAT
ATTTTTTATGTTTTTTGATTATATAAAGTAAATGTCAATATTGAGGTGAA
TTTATTATTAATTATTTTAGTAATTTATGGATGGGAGTTGAGACTGTGGT
GTGTGTTAATATTTATAATAAGCTAGTGTGTTTTATGATTTTATAATAGC
GGTATAGTTGGTTTATATTATTAATGAACGTATAGAAAATAATAATTAAT
ATATTGTGTGATAGTTTTTATCATTGACTGTTTGTATATTGGAGGTATTA
GTAGTTATGTGGTTATAGTGTATTTTGTTTATATAATTCTATATGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_h01.b1 MSMg01no320_h01.b1 CHROMAT_FILE:
MSMg01no320_h01.b1 PHD_FILE: MSMg01no320_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:57 2005
         (114 letters)



>mm_chr18_5369226_5369739
          Length = 514

 Score =  213 bits (110), Expect = 3e-60
 Identities = 113/114 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctatggcctaagtgatggctgatgttggagtgtttacatacaagatcaagggaagtt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ctgctatggcctaagtgatggctgatgttggtgtgtttacatacaagatcaagggaagtt 260

                                                                 
Query: 61  cccagcttggcttctgtaactctactctcaaccctattaaagaaggaatgagtg 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagcttggcttctgtaactctactctcaaccctattaaagaaggaatgagtg 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)