Query= MSMg01no322_e23.b1 MSMg01no322_e23.b1 CHROMAT_FILE:
MSMg01no322_e23.b1 PHD_FILE: MSMg01no322_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:14 2005
(671 letters)
>mm_chr18_27561979_27563049
Length = 1071
Score = 1052 bits (544), Expect = 0.0
Identities = 617/668 (92%), Gaps = 45/668 (6%)
Strand = Plus / Minus
Query: 1 gaactctacggcagataccctaaaaatgggcacacatacttcaggtctcagtaatgtttg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gaactctacagcagataccctaaaaatgggcacacatacttcaggtctcagtaatgtttg 577
Query: 61 aatccagatcaagagaattcttgaattctgtaaagcaccaaggaatttagagcaattcaa 120
||||||||||||||||| ||| || ||||||
Sbjct: 576 aatccagatcaagagaa---ttg-------------ac----------------attcaa 549
Query: 121 ttgacattctcctccccaagttgtactctttcattaatgttaacttctgagtgagaccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttgacattctcctccccaagttgtactctttcattaatgttaacttctgagtgagaccta 489
Query: 181 gacatacttacagaaatttctatgctaattcaatagttcaaatagtgcagtctctcaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gacatacttacagaaatttctatgctaattcaatagttcaaatagtgcagtctctcaata 429
Query: 241 ctcatcacaattatttgaaaatattttagaatagaattttacagttttaagtgcagacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctcatcacaattatttgaaaatattttagaatagaattttacagttttaagtgcagacag 369
Query: 301 cacaatcaatgaagaagctcagaaacctgagtttaaaaaaaaaaccacaaaacaaaacaa 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 368 cacaatcaatgaagaagctcagaaacctgagtttttaaaaaaaaccacaaaacaaaacaa 309
Query: 361 acaaacaaacaaacaaacaaacaaacaaaaaaaaaaacaaccttctgggtatctttgaaa 420
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 308 acaaacaaacaaacaaacaaa------------aaaacaaccttctgggtatctttgaaa 261
Query: 421 tataccaaatcttaagaaatgcagttaacactgaaatactagaagaactgtgtttgtttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tataccaaatcttaagaaatgcagttaacactgaaatactagaagaactgtgtttgtttc 201
Query: 481 tacagattttgatcataaattataaggttcctgtttcatttagaaaacaaattaggtcaa 540
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tacagattccgatcataaattataaggttcctgtttcatttagaaaacaaattaggtcaa 141
Query: 541 catttagtattctttatttttaatatatttattcaatctggttggcctttcctccataat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 catttagtattctttatttttaatatatttattcaatctggttggcctttcctccataat 81
Query: 601 attttttatcaaaa-tgtagctccaatatatggccgcatggccacagtaacataactgct 659
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 80 attttttatcaaaaatgtagctccgatatatggccgcatggccacagtaacataactgct 21
Query: 660 gcttcacc 667
||||||||
Sbjct: 20 gcttcacc 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_e23.g1 MSMg01no322_e23.g1 CHROMAT_FILE:
MSMg01no322_e23.g1 PHD_FILE: MSMg01no322_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:14 2005
(499 letters)
>mm_chr18_27375343_27376241
Length = 899
Score = 851 bits (440), Expect = 0.0
Identities = 478/494 (96%), Gaps = 6/494 (1%)
Strand = Plus / Plus
Query: 6 gaattctctctacctcccagatgccccaccttctatattctgcctaagccataggtcctt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctctacctcccagatgccccaccttctatattctgcctaagccataggtcctt 265
Query: 66 agatttattattgacagctgacacatccataaagacataagatattttctccacatatcc 125
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agatttattattgacagctgaaacatccataaagacataagatattttctccacatatcc 325
Query: 126 ctttccactcttcttcaaattgatgcccattttccttatcatcaattgatattctatagc 185
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 326 cttcccactcttcttcaaattgatgcccattttcctcatcatcaattgatattctatagc 385
Query: 186 tatatgcatttgtatatacatatgtattcataaatataacctgagtctatgtaacagtcc 245
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 386 tatatgcatttgtatatacatatatattcatacatataacctgagtctatgtaacagtcc 445
Query: 246 tggaaaataatttgtgtgttcttccctacagattaccatcacctcaatttccagctttac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggaaaataatttgtgtgttcttccctacagattaccatcacctcaatttccagctttac 505
Query: 306 acaggtgcctgtagacctttgcatagaattgagaccccatagacttttctctatcctgtt 365
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 506 acaggtgcctgtagacctttgcatagaattgagaccccgtaggcttttctctatcctgtt 565
Query: 366 ttggtatgtttattgctgccatcgttgttcatctagtactttggcagtcatgttggttag 425
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttggtatgtctattgctgccatcgttgttcatctagtactttggcagtcatgttggttag 625
Query: 426 attttatgggtatatcttctgatgttacaagagttctatatatattatgtgtgtatgtgt 485
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 626 attttatggatatatcttctgatgttacaagagttctatatatattat------atgtgt 679
Query: 486 gtatgggggggggg 499
|| |||||||||||
Sbjct: 680 gtgtgggggggggg 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
