BAC Information

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BAC

Clone NameMSMg01-322F16
Chromosome18 (Build37)
Map Location 85,421,919 - 85,583,229
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270, LOC665402, Neto1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322F16.T7 (MSMg01no322_f16.b1)MSMg01-322F16.TJ (MSMg01no322_f16.g1)
ACCAG441072AG441073
length729733
length of high quality
(start - end)
293 (68 - 360)288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no322_f16.b1 PHD_FILE: MSMg01no322_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:18 2005CHROMAT_FILE: MSMg01no322_f16.g1 PHD_FILE: MSMg01no322_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(85,582,941 - 85,583,229)(85,421,919 - 85,422,203)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAAATTCCATCCAAAGCACTAGTAGGGGCCCCTGAATACTTTCA
GTCATCAGACCCACTGCCATCTCTACCAATGTATTTCTTCCTAATCTGTA
ACTAGGATTTCAATTTCTGTGTGCATCTTTACTTAATCATTGACTATGAG
ATTAAGCACCTGGAAACGCCTGGCCTAGACCCAAGCAACCTGCAACACTA
TTGCTGTAGCTGTTTGGAATTTGGGATGGTGTACTTTGGGAAGTATGAGT
GTATTCTATGGAGGTTATAAGTCAGAAGTTTGTATTTGGTGCCTGAAAAG
GTAGAGTATATTAGATACTTCTATGCATAAACAAAGCCATCTTCCTTCTC
CTATCTCATCTACACACCTCAGTCTCTTGTCGACAAGTGCAGCAATGGAT
CTGTTGGAAGAAAGAGTACTATAATGCAATGATTCTGTCTCTTAGTATTG
AATCAAAATATCCTCTCACAATGACCATTGACTCTGTTTTAATCTTAAAT
AATGTCACTCTAGAAGATTCAGCAGATGGCCTGGGAGTCAAAGAACCATG
GGTGATAGATATCTATGTCCCTTGTAATATAGATTACTAGTTTTTGCATA
AATAAATAGCCCTGCTCCATGCTATTCCTTTGTAAACTGTCTAAGATTTA
TACCCTATCTATTGTTAAAGTCGACCTAC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGTCCAAAAAAATTCCATGGCCTCATATAGTTTTCTTCTA
AAACTATTTGTTTTTAGATTACATACAACCCTTTCTCCTATAAAATAAAC
CAATTTATCATTTGCTTGTTTTCTATAAATTCTTTTTTTTTCTATTCATG
ACTTTTATTCTTGAGATGACTTTAACCCTCTATCTTTGATGTCCCCAAGT
TCATCCTGGCTAATTAATCACAGTAGTCATTGAACCAGAGGTTACATGTA
TTTCCTCATAATTCCATATTCAGGGCTAAGCCTGGCAATGGACTATTTCT
ACAAATGATCATGTAGGCTGTTATCCTTATATTGTCTAGATTCTTTCCCA
TGGCCATAAACACCAAGCAGAAGGCCTATTTCTCATCCTCCCCATCCTCA
TGGCCACCTCCAGTCCTCATTCCTGAGAACCACATCTGTTTCATTTATTA
AGGCATGGGTAGCTCCAAGTAATGGAGGAAGTATATTCCCCAGAAAGAGA
GACTGACTGGAAGCAAAATAGAAGAGACAGTAGAACAATTTCAGGCAAAC
ACATGGTGACTGTAGGGATCAAAGGCCTGTGATGTTCCAGGGGCAGGAAC
TGTGTCACACCTCCCCTTGTAGAGCCATGCTGGATCTGGCAATGCAGGAA
TTCTAGAAGAAGCAGAGGCAGGGGAAAGATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_f16.b1 MSMg01no322_f16.b1 CHROMAT_FILE:
MSMg01no322_f16.b1 PHD_FILE: MSMg01no322_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:18 2005
         (293 letters)



>mm_chr18_85582741_85583433
          Length = 693

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagcactagtaggggcccctgaatactttcagtcatcagacccactgccatctctacc 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 489 caaagcactagtaggggcccctaaatactttcagtcatcagacccactgccatttctacc 430

                                                                       
Query: 61  aatgtatttcttcctaatctgtaactaggatttcaatttctgtgtgcatctttacttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aatgtatttcttcctaatctgtaactaggatttcaatttctgtgtgcatctttacttaat 370

                                                                       
Query: 121 cattgactatgagattaagcacctggaaacgcctggcctagacccaagcaacctgcaaca 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 369 cattgactatgagattaagcacctggaaacacctggcctagacccaagcaacctgcaaca 310

                                                                       
Query: 181 ctattgctgtagctgtttggaatttgggatggtgtactttgggaagtatgagtgtattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctattgctgtagctgtttggaatttgggatggtgtactttgggaagtatgagtgtattct 250

                                                            
Query: 241 atggaggttataagtcagaagtttgtatttggtgcctgaaaaggtagag 289
           |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 249 atggaggttataagtcagaagtttgtatttggtgcctgaaaaagtagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no322_f16.g1 MSMg01no322_f16.g1 CHROMAT_FILE:
MSMg01no322_f16.g1 PHD_FILE: MSMg01no322_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:18 2005
         (288 letters)



>mm_chr18_85421718_85422405
          Length = 688

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   aattccatggcctcatatagttttcttctaaaactatttgtttttagattacatacaacc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 202 aattccatggcctcatatagttttcttctaaaactatttgtttttagattatatacaacc 261

                                                                       
Query: 62  ctttctcctataaaataaaccaatttatcatttgcttgttttctataaattctttttttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctttctcctataaaataaaccaatttatcatttgcttgttttctataaattctttttttt 321

                                                                       
Query: 122 tctattcatgacttttattcttgagatgactttaaccctctatctttgatgtccccaagt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctattcatgacttttattcttgagatgactttaaccctctatctttgatgtccccaagt 381

                                                                       
Query: 182 tcatcctggctaattaatcacagtagtcattgaaccagaggttacatgtatttcctcata 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcatcctggctaattaatcacagtagtcattgaaccagaggttacatgtatttcctcata 441

                                                        
Query: 242 attccatattcagggctaagcctggcaatggactatttctacaaa 286
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attccaaattcagggctaagcctggcaatggactatttctacaaa 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)