BAC Information

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BAC

Clone NameMSMg01-322M10
Chromosome18 (Build37)
Map Location 13,724,345 - 13,858,280
singlet/doubletdoublet
Overlap geneLOC100040358, Zfp521
Upstream geneLama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379
Downstream geneLOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322M10.T7 (MSMg01no322_m10.b1)MSMg01-322M10.TJ (MSMg01no322_m10.g1)
ACCAG441379AG441380
length789727
length of high quality
(start - end)		314 (102 - 415)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no322_m10.b1 PHD_FILE: MSMg01no322_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:49 2005CHROMAT_FILE: MSMg01no322_m10.g1 PHD_FILE: MSMg01no322_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,857,970 - 13,858,280)(13,724,345 - 13,724,519)
sequence
NTTTTCTTTTTTTTTATTTTTTATTTATAACCTCATCNAANTGCCCNNNN
NNNCCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTGGAATGCAACCCCTGTCCTATGAAATTGAAAGGCAG
AGAGTCACTGCCCCTCCTTCTCAAAAAGGTTACCCTTTGAATATAAATTA
CCTGAGCGGGTGCCTTTCCTTCTAATCAGATGACCTTTTGAAACTGATGA
ACCAGAGTTTAAATCCTAAGGCTGCCAGTCAGTTTTTAAATCAATGCCTG
GCTCCAGCACCCTTCGGAACCTAACTGGATCTCAGTGGATCGCTTACGCA
GAAGGGCCACACACGGAGCTTGGAGGAATGTTATAGCTGATTGTGGGGCA
GCCCAACTTGATTGTATTATTTTGCCCCCCCCCCCCGACTAGGACTTACT
TCACCAAGTCCTCTTTTTACCCCCCACAAAAATTATAAAACTATCCTTCC
AGGATTCTAAGACCTAAAACCAGAGGGAGTCACCACATATCTGCAATGCT
TGTTATAGGGCATTTCTGAGCAATTATCAATCTAATATAATTATTTGTTG
CCAATTACTACCCTAGCCTATTATATATTCAGCATAAGTTTGTTTAATTG
TCGTTGGAGTGTTTAAGAGTTGTTCTGAGCATATTTCGAGCGTTTTTGAC
CCCCTGTTGCGCACCTCTACTTCCCTCGCACATTAGGTTATTCTGCGCTT
TTGTCCCCACATTAATTATATTTCATCTTCACGCTATTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATTTAAACTGAGGATGATTT
TAAACTTCTGACTTTCCTGATCTACAGCCTTAGCTCTGAGATACAGGTAT
GTACCACCAGGCCTGCTTTTATACAGTGATAGGGACTGAAGCCTTAGCTC
TGAGATACAGGTATGTACCACCAGGCCTGCTTTTCTACAGTGATAGGGAC
TGAAGCCAGTCTCATGCATGTTAGGTAAGCACACTTTTAACTGAACCATA
TCCCCAATTCACAAAAGGCTATATCTGTGAATCTGGGTGAGGTTCATATC
CAGTGACTCTGTTCTTGTACCCCCCCCCCCCGCCTCCTAATCATGCAAAG
AGCTGTGTTCCAAAGGCACACTACAGGAGCTGAATTCACTTTAGCAGGTG
GTTCTCAAGGGCTGGCAGATGCTATTGTATTTAATATGTGCAAATAATTC
AGGCTGCTGCTCAGAGCTCTGGCCTCTGCTTTAGTGCTAGCAGTATGGTG
AGTGGAGAACCTGATGGTGTTCTCCCACTCTTCCTTGCCAACAAACCTGT
AATTTCACTTTTAGGTCGTTGTTGTCAGCCCAAGACATTAGATCATGTTT
GACTATGATGCCTGACATGGATATGCCCGTGTCCCTCATGAAATCATTGG
TTTTTCAGCTTTCCCTGTGGCCAGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_m10.b1 MSMg01no322_m10.b1 CHROMAT_FILE:
MSMg01no322_m10.b1 PHD_FILE: MSMg01no322_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:49 2005
         (314 letters)



>mm_chr18_13857767_13858480
          Length = 714

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtggaatgcaacccctgtcctatgaaattgaaaggcagagagtcactgcccc 63
           |||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 514 ggaattcagtggaagggaacccctgtcctatgaaattgaaaggcagagagtcacggcccc 455

                                                                       
Query: 64  tccttctcaaaaaggttaccctttgaatataaattacctgagcgggtgcctttccttcta 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 454 tccttctcaaaaaggttaccctttgaatataaattaccggagcgggtgcctttccttcta 395

                                                                       
Query: 124 atcagatgaccttttgaaactgatgaaccagagtttaaatcctaaggctgccagtcagtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atcagatgaccttttgaaactgatgaaccagagtttaaatcctaaggctgccagtcagtt 335

                                                                       
Query: 184 tttaaatcaatgcctggctccagcacccttcggaacctaactggatctcagtggatcgct 243
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 334 tttaaatcaatgcctggctccagcacccttcagaacctaactggatctcagtggatcgct 275

                                                                       
Query: 244 tacgcagaagggccacacacggagcttggaggaatgttatagctgattgtggggcagccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tacgcagaagggccacacacggagcttggaggaatgttatagctgattgtggggcagccc 215

                      
Query: 304 aacttgattgt 314
           |||||||||||
Sbjct: 214 aacttgattgt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no322_m10.g1 MSMg01no322_m10.g1 CHROMAT_FILE:
MSMg01no322_m10.g1 PHD_FILE: MSMg01no322_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:49 2005
         (287 letters)



>mm_chr18_13724033_13724719
          Length = 687

 Score =  308 bits (159), Expect = 3e-88
 Identities = 171/175 (97%)
 Strand = Plus / Plus

                                                                       
Query: 113 agccttagctctgagatacaggtatgtaccaccaggcctgcttttctacagtgataggga 172
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 313 agccttagctctgagatacaggtatgtaccaccaggcctgcttttatacagtgataggga 372

                                                                       
Query: 173 ctgaagccagtctcatgcatgttaggtaagcacacttttaactgaaccatatccccaatt 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctgaagccagtctcatgcatgttaggtaagcacacttttaactgaaccatatccccaatt 432

                                                                  
Query: 233 cacaaaaggctatatctgtgaatctgggtgaggttcatatccagtgactctgttc 287
           |||||||||||||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct: 433 cacaaaaggctatagctgtgaatctgggtgaggttcacatccagtaactctgttc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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