BAC Information

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BAC

Clone NameMSMg01-322N03
Chromosome18 (Build37)
Map Location 31,851,512 - 31,851,829
singlet/doubletsinglet
Overlap geneSap130
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46
Downstream geneLOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322N03.T7 (MSMg01no322_n03.b1)MSMg01-322N03.TJ (MSMg01no322_n03.g1)
ACCAG441411AG441412
length749793
length of high quality
(start - end)
322 (45 - 366)294 (78 - 371)
definitionCHROMAT_FILE: MSMg01no322_n03.b1 PHD_FILE: MSMg01no322_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:52 2005CHROMAT_FILE: MSMg01no322_n03.g1 PHD_FILE: MSMg01no322_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGCTGTAGCTACCTTCCTGTAAATCACTACCTATTTATTCTACT
GCCTTTGTCTCCACTTTCACTCCGCTGCTGTTTCGGGGTGGGGAGTTAGC
TTCCTCATGTCTTTCATAGGCAACAGATATAAGGCTGATGGAATGTGAGC
TTATTTATTTTAGTTAGTAGACTATGTTTCCAGATGCTAAAATGTTACTT
GATACAAGGCATCTATAAATTTTATTACTAAATGAGGTTTAAGAGGCATA
TCTAAATACAGAAACATGGCATGTTATTATTAGACTAAATAGAAAGTACA
GAAACCCCCAACACTCTAATCTAATCACATAACTGTGGTTTTAAAAGCCT
ATGGCCCTTCTGCATGACCCACCGGCTATGTGTAGCCCAGCTCCTTGGGA
GGCTAAGTTAGGAAGATCACTTGAACTCATGCCATTGGAGAGCAGCCTGG
GAAACATATCAAGACCCTAGCTTACAACCAATTTATCTATATGTATGGCC
AGAAAAAGGCACTGAAGATCACTCATTATAAGCGTTACTAATTACCATTA
TTGTGGGAGTGAGACTGGCTAGTGTGTGGGGAACAGGATAATGATTTTGA
CTTTATACTTTATATACCCCCAGAGACCTTACTCAAATATATTACCCCCA
ACCGTCTACTTTTTAAATTTTTAATAACTTGGCTTTTGACTTTCTTTTG
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATTACAGAAACCTAGTAATAGA
ATAAGGGGGTGGGGGATGGTCCATCCCCAGCAAGCAGCAGAACTCAGCAG
CTTCAGCCATGTAGCTATAGCTTATGAGTCAAGAATAGAAGGAACTACTA
GGACAATGGATGCTGGTTAGCTGTAGCTAAGAAATTAGCAGTGATTAAAA
GGAGACCAGCATCACTGAGGTGACATCTTCTGAGAAATGTTTTCTGAAAT
CATAAAGAAGCTGTGTTCCAAAGACACCTTAGGTTGTACCTCATGTTTTA
GCTAGACTTGATAATGTATATGAATCACTCCCACGGCACTAGTTTTGAAG
GTGTGAAGGGGTCAAGAAACCCCCCTCATTCTTGCCACTGTGAGAGGCCA
GGGAAGGTCATTCATTGGTAATGGAGAAGGCTCAATTGAAGTTAATGGTC
CAGGTCTGAAGGTGTTGTGCACAGAATTTGAGGATTGGTACCATGAACTG
AGCCTATGAATAGCGGGCTGAACACGTCTATGGATTGTCCCTTTTTAGGA
TGAGTCGCCCTCGCAGTTACCCTGTCCTACTTGTTCCCGACTTTGTTCCA
TATTACCCCCCCCCCCCCCTCATCTCCCTATTTCCCTTTCCCCTGTTGCT
TCATTTCACCCCTCCCTCCTTCCCCGGCCTCTCTTCTCCTCTTTTTTCAC
CCCTCTTCCCGTTGTTATCTCTTTTCTCTCCTCCTCCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_n03.b1 MSMg01no322_n03.b1 CHROMAT_FILE:
MSMg01no322_n03.b1 PHD_FILE: MSMg01no322_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:52 2005
         (322 letters)



>mm_chr18_31851308_31852029
          Length = 722

 Score =  578 bits (299), Expect = e-169
 Identities = 314/319 (98%), Gaps = 2/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgctgtag-ctaccttcctgtaaatcactacctatttattctactgcctttg 63
           ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattctctgctgcagac-accttcctgtaaatcactacctatttattctactgcctttg 464

                                                                       
Query: 64  tctccactttcactccgctgctgtttcggggtggggagttagcttcctcatgtctttcat 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tctccactttcactctgctgctgtttcggggtggggagttagcttcctcatgtctttcat 404

                                                                       
Query: 124 aggcaacagatataaggctgatggaatgtgagcttatttattttagttagtagactatgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aggcaacagatataaggctgatggaatgtgagcttatttattttagttagtagactatgt 344

                                                                       
Query: 184 ttccagatgctaaaatgttacttgatacaaggcatctataaattttattactaaatgagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttccagatgctaaaatgttacttgatacaaggcatctataaattttattactaaatgagg 284

                                                                       
Query: 244 tttaagaggcatatctaaatacagaaacatggcatgttattattagactaaatagaaagt 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 283 tttaagaggcatatctaaatacagaaacatggcaagttattattagactaaatagaaagt 224

                              
Query: 304 acagaaacccccaacactc 322
           |||||||||||||||||||
Sbjct: 223 acagaaacccccaacactc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)