BAC Information

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BAC

Clone NameMSMg01-322O20
Chromosome18 (Build37)
Map Location 35,399,267 - 35,399,557
singlet/doubletsinglet
Overlap geneCtnna1
Upstream geneApc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Lrrtm2
Downstream geneSil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322O20.T7 (MSMg01no322_o20.b1)MSMg01-322O20.TJ (MSMg01no322_o20.g1)
ACCAG441488AG441489
length813748
length of high quality
(start - end)
166 (78 - 243)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no322_o20.b1 PHD_FILE: MSMg01no322_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:59 2005CHROMAT_FILE: MSMg01no322_o20.g1 PHD_FILE: MSMg01no322_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCAGCTTGCTACAGAGAAAATTCCAAGTACACAAAAGCTTA
GGTCCAGACATGGGGGTACACATCTTCCTCCCAGCACTAAGGAGACAGAA
GCAGGGGGATCTCTGAGTTTGAGGNCAGCCTGGNCTAGAGGGTGAAGAGT
TCCAGGACAGCCAGGGCTACATAGAAAAACTCTGTCTTGAAAAATGAACA
AACCTAGAAAATATTATTATTGAGACTGAGAGATGGCTTCTTAGCTGTTA
AGAGCATTGTGGCTCTCTCATATGTTTTTTTTCAGCTCCCATAGCCCATG
CTAGATAGCTCATATTTTTTTTTTTCCCCCCCCCCCCCCCCCCATTTTTG
TTCTTTCTGACCTCCTTAGATACCCCCCCGGAAAGAAAAAAAAAAAAATA
TTTTGGGCGGGGTGATTCACTTTATCTTTATTTCGGTGTTATGGTCGTTC
TTATATTTTTCCCCCCCCTTTTTCCTTTTCCCCCGCCTTTTGGCCCTTCC
CCCTTTTTTTTCTTTTTCCCCTTCACACCTTTTCCCTTACTTCCCCTCTT
CTCTTTTCTCTTTTCTTTTTTTTCTTTCCTCCTCTTCCTCATTTTGCCGC
TCCCTCCTTTTTCTCTCCTTTTTTATCCTCTCTCCACTTTATCCTAGCCA
TTATTTTGCTCTATCGCTTGCCCCCCGCCTCTCCTTGTCCCCTGCGCCCT
TTTCCTTTTATTCTCCCCTTTTTTTACCTCTTTTGCCCTTTTCCCCCCTT
CTCTTTTTTTTTA
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTACAATAAAAGCTGAGAGAGCT
GAGAGGCTCCTCCCCTGAGCTTCACACCCTTGTTACCAGTGACCAGTGGC
ACCAGGACATAGGTCTAAACTGAAGTATCAAGACTGGTGGACTGTTATAT
GACACACAGATCACACCAGCAGGGAAAAGTTCTGCTAGCCCAGTAACTAA
TGATGCAGGGTGGACACCAGCCCCACCAGGAGGGAAAGAGCTCCAGGTCC
ACTCCCCCTGCTCAGGACACAAGTGTGTTATCCAGCATGTTACTGATAAG
AGTTTCCTTGCCCAGATGTTTTTTTTGTTCTCCCNNTGCAANCATGACCT
GGACAACAATTCTACATGCCACTTTAGGGAACCAGATCATTACCTGAGAC
AGCCAAGAAGTCATCGATGGAAGTAATGTCATCAACAGCATCTGTGAGAA
CACGGACTTGCTTTTCCCATTGCTCTTTAAAAAGATCCATGTTCTCTTGG
GCCAGTTTACTCTGCGGCTTTGCTGCCAACGCCAATGCAGCATTGATAAC
CTGCAGAAGACAGTAAAAGAATGCACATAGCTCATCCTATCACAGCCATT
GCAAACCAATCACACGGGGCGCTTTGGTCAAACATGACATCATGTGCTCC
ACCACAGGTCGTACAGAGGAAATACTGAATAGCAGGCCTTAGACTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_o20.g1 MSMg01no322_o20.g1 CHROMAT_FILE:
MSMg01no322_o20.g1 PHD_FILE: MSMg01no322_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:00 2005
         (291 letters)



>mm_chr18_35399067_35399757
          Length = 691

 Score =  516 bits (267), Expect = e-151
 Identities = 285/291 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacaataaaagctgagagagctgagaggctcctcccctgagcttcacacccttgttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 491 tctacaataaaagctgagagagctgagaggctcctcccctgagcttcacaggcttgttac 432

                                                                       
Query: 61  cagtgaccagtggcaccaggacataggtctaaactgaagtatcaagactggtggactgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cagtgaccagtggcaccaggacataggtctaaactgaagtatcaagactggtggactgtt 372

                                                                       
Query: 121 atatgacacacagatcacaccagcagggaaaagttctgctagcccagtaactaatgatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atatgacacacagatcacaccagcagggaaaagttctgctagcccagtaactaatgatgc 312

                                                                       
Query: 181 agggtggacaccagccccaccaggagggaaagagctccaggtccactccccctgctcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agggtggacaccagccccaccaggagggaaagagctccaggtccactccccctgctcagg 252

                                                              
Query: 241 acacaagtgtgttatccagcatgttactgataagagtttccttgcccagat 291
           |||||||||||  | ||||||||||||||||||||||||||||| ||||||
Sbjct: 251 acacaagtgtgggaaccagcatgttactgataagagtttccttgaccagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)