Query= MSMg01no323_i16.b1 MSMg01no323_i16.b1 CHROMAT_FILE:
MSMg01no323_i16.b1 PHD_FILE: MSMg01no323_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:12 2005
(706 letters)
>mm_chr18_49376183_49377288
Length = 1106
Score = 1280 bits (662), Expect = 0.0
Identities = 692/702 (98%), Gaps = 2/702 (0%)
Strand = Plus / Minus
Query: 4 caagctacagtgcctgtattctctcattgtttcctcagagggtattttattccttggagg 63
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 904 caagctgcagtgcctgtattctctcattgtttcctcagagagtattttattccttggagg 845
Query: 64 ctgaacatccttggagatggagaccgcccgcgtcctttgccacttttgtccttctatgtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ctgaacatccttggagatggagaccgcccgcgtcctttgccacttttgtccttctatgtg 785
Query: 124 aggcatgctttgtgagaactcagtaaacattgatgctcttgattatgacagctaatgtta 183
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 784 aggcatgctttgtgagaactcagtaaacattgacgctcttgattatgacagctaatgtta 725
Query: 184 atacagctcttagcaggagtcaaaagacttatttcctgtgcattgtgttataccttttgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 atacagctcttagcaggagtcaaaagacttatttcctgtgcattgtgttataccttttgg 665
Query: 244 gatacttggtatttatgtcaagacctcgtatttggcagatatgtgttgcattggcgagct 303
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 664 gatacttggcatttatgtcaagacctcgtacatggcagatatgtgttgcattggcgagct 605
Query: 304 ttatctctggcatggctcacacatttctataatccttaacatctatttcataaatctcat 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttatctctgacatggctcacacatttctataatccttaacatctatttcataaatctcat 545
Query: 364 agcgatcacatgagggcagagcaactgttatcctagtttaccatcagaaatacagacaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agcgatcacatgagggcagagcaactgttatcctagtttaccatcagaaatacagacaca 485
Query: 424 gataagcagccagggtgatccagctcctaagaggtgaaatcagtagatttggttagacta 483
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 484 gataagcagccagggtgatccagctcctaagaggtgaaatcagtagatctggttagacta 425
Query: 484 attctctacttttgctttcttagtggctatgttacaaacattaactccacacattgattc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 attctctacttttgctttcttagtggctatgttacaaacattaactccacacattgattc 365
Query: 544 caggaagaatttcaaaatttttagtattaaactatacaccgtaattatttatttattaac 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caggaagaatttcaaaatttttagtattaaactatacaccgtaattatttatttattaa- 306
Query: 604 aa-atcctaagatgacttaatgaagtatcattgttttacttttaccactaatgtttgttt 662
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aagatcctaagatgacttaatgaagtatcattgttttacttttaccactaatgtttgttt 246
Query: 663 tattaatttgaatcataataagatactgaatgatagaattat 704
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tattaatttgaatcataataagatactgaatgatagaattat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no323_i16.g1 MSMg01no323_i16.g1 CHROMAT_FILE:
MSMg01no323_i16.g1 PHD_FILE: MSMg01no323_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:12 2005
(661 letters)
>mm_chr18_49236013_49237073
Length = 1061
Score = 1234 bits (638), Expect = 0.0
Identities = 654/662 (98%), Gaps = 6/662 (0%)
Strand = Plus / Plus
Query: 1 cttccccctccactggtccttacaatgtttctgactcctcttccacaaaggtccctgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccccctccactggtccttacaatgtttctgactcctcttccacaaaggtccctgatc 260
Query: 61 actgagggtaaaagaggtttttcttaaagtgtcagtcacttgagttcaattctcaagcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgagggtaaaagaggtttttcttaaagtgtcagtcacttgagttcaattctcaagcac 320
Query: 121 aggttttttgcaaagtcaactacacaataacattggtttgtattcccagttctggggagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggttttttgcaaagtcaactacacaataacattggtttgtattcccagttctggggagg 380
Query: 181 gacagaattcagcctagtttaattggtaaacttcaagcctatgacagacgctgttt-aaa 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gacagaattcagcctagtttaattggtaaacttcaagcctatgacagacgctgtttaaaa 440
Query: 240 aaaaaaaaaaggaaaaagaaaaagaaaagaaaagtggaagactgttaaggagtcctaaga 299
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 441 aaaaaaaaaaggaaaaaga-----aaaagaaaagtggaagactgctaaggagtcctaaga 495
Query: 300 ttgacctttaaactctatgaatgtgtctgtgtatgtgtgtgttcatgcgcattcatgtat 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 496 ttgacctttaaactctatgaatgtgtctgtgtatgtgtgtgttcatgtgcattcatgtat 555
Query: 360 acacacacactatacacacatatacatacacacacacactaaagggtgacttgtcttttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 acacacacactatacacacatatacatacacacacacactaaagggtgacttgtcttttt 615
Query: 420 atatttttttctggagaaaatagaaatcaaggcatacttctcaacacttgagttttgccc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atatttttttctggagaaaatagaaatcaaggcatacttctcaacacttgagttttgccc 675
Query: 480 ctcatctttgagatgggaagtatgataaatctctcctttaaacaccaagtctttccaatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctcatctttgagatgggaagtatgataaatctctcctttaaacaccaagtctttccaatt 735
Query: 540 taaaaccccgaactctgggtgtcagcgggcatgctgttctttatggtctttacagtgtag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 taaaaccccgaactctgggtgtcagcgggcatgctgttctttatggtctttacagtgtag 795
Query: 600 tttttcttcctgctgtgtattttgattaattgtccagctggcaactaaccagttcctgct 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tttttcttcctgctgtgtattttgattaattgtccagctggcaactaaccagttcctgct 855
Query: 660 ct 661
||
Sbjct: 856 ct 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
