Query= MSMg01no325_f06.b1 MSMg01no325_f06.b1 CHROMAT_FILE:
MSMg01no325_f06.b1 PHD_FILE: MSMg01no325_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:49 2005
(682 letters)
>mm_chr18_77317159_77318240
Length = 1082
Score = 675 bits (349), Expect = 0.0
Identities = 371/381 (97%), Gaps = 7/381 (1%)
Strand = Plus / Minus
Query: 302 tggtacagcaactctggaaaagtttagcaagttctttaaaaaaacaaaaagcaaaacaaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 tggtacagcaactctggaaaagtttagcaagttctttaaaaaaacaaaaagcaaaacaaa 1023
Query: 362 acaaaacaaaaaacccaaaaaccttacaataaccataagctccatcaattaattatactc 421
||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 acaaa--aaacaa---aaaaaccttacaataaccataagctccatcaattaattatactc 968
Query: 422 ctgggcagagaaatgaaaatttatgcatgcacaaatgaatctttataaaacttatcgtaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 967 ctgggcagagaaatgaaaatttatgcatgcacaaatgaatctttataaaac--atcgtaa 910
Query: 482 caaccaaaaccttaacacagatgtcctaaaaaattttcagtaaatacataccaaccacta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 caaccaaaaccttaacacagatgtcctaaaaaattttcagtaaatacataccaaccacta 850
Query: 542 atacttattcaacagtaaaatgaataactcaggttttcacatattatggagcagatggca 601
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 849 atacttattcaacagtaaaatgaataactcagtttttcacatattatggagcagatggca 790
Query: 602 ctcagaaaagtaattataaaaggtcaacactgggactgggaagctatggctccacagtaa 661
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctcagaaaattaattataaaaggtcaacactgggactgggaagctatggctccacagtaa 730
Query: 662 ggtgctttccatacatgtctg 682
|||||||||||||||||||||
Sbjct: 729 ggtgctttccatacatgtctg 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_f06.g1 MSMg01no325_f06.g1 CHROMAT_FILE:
MSMg01no325_f06.g1 PHD_FILE: MSMg01no325_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:49 2005
(239 letters)
>mm_chr18_77160268_77160906
Length = 639
Score = 387 bits (200), Expect = e-112
Identities = 210/216 (97%), Gaps = 6/216 (2%)
Strand = Plus / Plus
Query: 1 cagtcctacctaactgtagagaacatagaacaagtggaaacatcttgtgattctctgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcctacctaactgtagagaacatagaacaagtggaaacatcttgtgattctctgtga 260
Query: 61 aggcttcagctggccaccaccaggctaatgctgtctgacttgtatttctggctctgttcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcttcagctggccaccaccaggctaatgctgtctgacttgtatttctggctctgttcg 320
Query: 121 catgaaggcggcttcttcttcttcttcttcttctaattcttcttcttcttcttcttcttc 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 catgaaggcggcttcttcttcttcttcttcttct---tcttcttcttcttcttcttcttc 377
Query: 181 ttcttcttct---tcttcttcttcttcttcttcttc 213
|||||||||| |||||||||||||||||||||||
Sbjct: 378 ttcttcttctaattcttcttcttcttcttcttcttc 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 127
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
