BAC Information

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BAC

Clone NameMSMg01-326M03
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326M03.T7 (MSMg01no326_m03.b1)MSMg01-326M03.TJ (MSMg01no326_m03.g1)
ACCAG444294AG444295
length746746
length of high quality
(start - end)
137 (45 - 181)517 (76 - 592)
definitionCHROMAT_FILE: MSMg01no326_m03.b1 PHD_FILE: MSMg01no326_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:31 2005CHROMAT_FILE: MSMg01no326_m03.g1 PHD_FILE: MSMg01no326_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:31 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCACCATGGCCGTGGTCGGCAAAGTGAGTTCCAGAACAGCCA
GGGCTATAGGGAGAAACCCTGTCTCAAAAACCAAACTAAATTAATATAAT
ATATTAAAAGGAAATAGAATTAGATAAGAAGTATACAGAAATCAGACTTA
GGCCCACGATTATCTGCAAGTTAACGTAAGCCCAGCTAGATTGATTGAGT
TACCGCCATCCCCGCAGAAATATCAAACATCCGCTCACACATCCAATGTG
GCAGGACAGTCTGGCATAACAGAGATGTGCTGGGACGGACAGGGCTATAC
AGAGAAACCCTGTCTCGAAAAACCCCAACGAACAAAAATCCAATGTGCCT
TCTCGATTGTGACTTCATGAGCAACATTCGATAGACAATAGTACGAGAGA
AATCCTATGCCTGAAAACCCTTCCTTCCCTCCTTCCTTCCTTCCCTCCCT
CCTTCCTTCCCTCCTCTCTCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTC
CCCCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTCCTTCCTTCTTACTTT
CATTCTTTCCTTTCATGCGTGCTTTGGTTCTTTCTTGCTGGCTTTCTGTC
TGTCTGTCATACGAGGGTTCTTGATTTCCGAATAAAATTAGTACTG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTC
CACATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCAT
ACCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAA
AGAGGAATGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGT
CAGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTT
GGAATTTCTACTTCATGTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCT
GTATAGCCCTGGCTGTCCTGGCACATTGGATTTTATAACAGACTTTGTGT
GTGTGTGTGTGTGTGTGCGCGCGTGTAATACTTCTCCTGTGATTGCCGTA
ACTTGCAATCTAGTGGGCTTATGTTTGATTCCTGTAATCTTTTTTTCTAA
TTCTTTTTCCTTTTTATATTTTATTTTATTTTATTTTATTTTATTTTATT
TTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTCATTCTATT
TCTGTCTCTCTCTCCTCTCTCCTCTTCCCCCTCCTTTACTCTCCCTTTTT
CTCTTTTTATACACTTCCTCGTTTCTCTTCTCCTCCCCCTACCCCTATTC
TCCTCTTTTCTCTTTCTCCGCCTTGCCTTTTCATCTCTCTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_m03.g1 MSMg01no326_m03.g1 CHROMAT_FILE:
MSMg01no326_m03.g1 PHD_FILE: MSMg01no326_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:31 2005
         (517 letters)



>mm_chr18_40467476_40468391
          Length = 916

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 916
Length adjustment: 10
Effective length of query: 507
Effective length of database: 906
Effective search space:   459342
Effective search space used:   459342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)