BAC Information

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BAC

Clone NameMSMg01-327F14
Chromosome18 (Build37)
Map Location 67,399,888 - 67,400,341
singlet/doubletsinglet
Overlap geneMppe1
Upstream geneCcbe1, Pmaip1, LOC100042852, Mc4r, Gnal, Chmp1b
Downstream geneImpa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327F14.T7 (MSMg01no327_f14.b1)MSMg01-327F14.TJ (MSMg01no327_f14.g1)
ACCAG444731AG444732
length921763
length of high quality
(start - end)
---548 (78 - 625)
definitionCHROMAT_FILE: MSMg01no327_f14.b1 PHD_FILE: MSMg01no327_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:14 2005CHROMAT_FILE: MSMg01no327_f14.g1 PHD_FILE: MSMg01no327_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATACATTGAGAGGACAGGAGACGCCGGGATTCTTCAGTTGANNGAANNA
NNNAANGTTCCAAAAAAAAGTGNNANNAGGAAAAAGAGNNNAGAAGAAGG
GAAAAAAAAAAAAAATTATAAAAAGAGAAAAANNGAAAAATAAAAGAAAG
AAAAAANAGGATNTTATTATTGAATAAGTTTATATGAAGTTTTTTTATAG
AAATAATATATAAATTATTNATTAAATGTGGAATTAAAAAGGAATAGATA
TTTGTTGGGAATTGTTTGTGANGTAGATGATGTTTATTGAATTTTTTTGT
TGATGTTTATTGTGTGTGTTTGTTTTTTTGTGTGATATNTTTTTTGTTTT
TTTTTTTTTTTAATAAAATTTTTTTGTATTTAAATTTATAAATATTTTTA
TTTAACTCCCCCCAACTCCTTCTCTATTATTATATAAGTAGTATAGTTTT
GAATGTGTGTTATCCCCCCCCACCCACCACAAATAAAATAGAATTTGTTA
ATATATGAATATAAATTATTTTTTAATTATATTTTTAATATTAGGGTTAA
TACTATAGATAGAAGGTTATGTTTACATTCACACATCCCCGCTCTTTATC
CCCCTTATATCTCCATTTCTTACACCTCCTTTCTTACCCTTTCTCTCATA
CTTTCTTACCATTTGTTTCTTTGTTTTTCCACTTTACTTTATTTTCGTCT
CCATCTCTTCCTGTCCCGTTTTCTATTCCTATATACGTTTTTACAAGTTA
CTCGTCTGCTTCGCCTCCGCGATCAGGAATCATCATTTTATACGACACTA
ATTATTATATAATTTATCCATCTTTGTTCACTCATTATTCTTATTCTTTA
TATTCTCATTTTTACACTCTCTTATGCACATTTCTCTGCCTGCTGTTTCT
ATCATTGCTTCTTGCATTTGG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCACCTGGAATTCTTACTTT
GTAGCTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAACCAATGGAGAAG
AGAAGAAGATTTAATTGGGTTCCTCACCTGCTCCATTCATCATGCACCCA
ACCACAGAGCCACACCCCATCCCTCATTCCTCTGCCTTCATTTGAATACC
ATTTATATTAAGTACTTAAATTAAAGAGGTTATAGCAAGCATGTTATGTA
TCAAGTGCGTTGTTACCTAAGGCTAGCCTTGCCTGCAATGTGGAAGCAAC
TTCTCCTCCTGGAACCTTTCTCAGAAACCCCACAGCATCATTATCACCAG
GTGGCAGCTCACCATGGCCGCCCGCCCCCCCACCTTGTTTACTGATAATC
CTGCTCAACTCAATTTCTCTAAGACCAAACTACAGGTGCCAAGAGACCAG
ACGCACCATAGACTCTCTCTCTCTTAACTCTTTAAGTGTGGAACAACAGC
ATGAATAATCACAGGGACGAGGCCATGACGTGGATGAGGAAAAACAGCAA
CACAGCTCTCACATTGAGAGGAGTAAGAGACAGCTTATTCTAAAGCCAAA
AATGTCTGATCACACAGCCCAGCAACTCCAAATACCATATTCCAATGTGG
TGATGGTTTCACAAAGGGTTATATATGAACGGTATCAAGACTCTTTTAAA
AAAGTTGGCGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_f14.g1 MSMg01no327_f14.g1 CHROMAT_FILE:
MSMg01no327_f14.g1 PHD_FILE: MSMg01no327_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:14 2005
         (548 letters)



>mm_chr18_67399594_67400541
          Length = 948

 Score =  824 bits (426), Expect = 0.0
 Identities = 447/454 (98%)
 Strand = Plus / Plus

                                                                       
Query: 95  cctcacctgctccattcatcatgcacccaaccacagagccacaccccatccctcattcct 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cctcacctgctccattcatcatgcacccaaccacagagccacaccccatccctcattcct 354

                                                                       
Query: 155 ctgccttcatttgaataccatttatattaagtacttaaattaaagaggttatagcaagca 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctgccttcatttgaataccatttatattaagtacttaaattaaagaggttatagcaagca 414

                                                                       
Query: 215 tgttatgtatcaagtgcgttgttacctaaggctagccttgcctgcaatgtggaagcaact 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgttatgtatcaagtgcgttgttacctaaggctagccttgcctgcaatgtggaagcaact 474

                                                                       
Query: 275 tctcctcctggaacctttctcagaaaccccacagcatcattatcaccaggtggcagctca 334
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 475 tctcctcctggaacctttctcagaaaccctacagcatcattatcaccaggtggcagctca 534

                                                                       
Query: 335 ccatggccgcccgcccccccaccttgtttactgataatcctgctcaactcaatttctcta 394
           ||||||||||| |  ||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccatggccgcctgttcctttaccttgtttactgataatcctgctcaactcaatttctcta 594

                                                                       
Query: 395 agaccaaactacaggtgccaagagaccagacgcaccatagactctctctctcttaactct 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agaccaaactacaggtgccaagagaccagacgcaccatagactctctctctcttaactct 654

                                                                       
Query: 455 ttaagtgtggaacaacagcatgaataatcacagggacgaggccatgacgtggatgaggaa 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttaagtgtggaacaacagcatgaataatcacagggacgaggccatgacgtggatgaggaa 714

                                             
Query: 515 aaacagcaacacagctctcacattgagaggagta 548
           ||||||||||||||||||||||||||||||||||
Sbjct: 715 aaacagcaacacagctctcacattgagaggagta 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)