BAC Information

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BAC

Clone NameMSMg01-327N02
Chromosome18 (Build37)
Map Location 40,950,675 - 40,951,026
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041939, Yipf5, Kctd16, EG225416
Downstream geneLOC677182, LOC100041988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327N02.T7 (MSMg01no327_n02.b1)MSMg01-327N02.TJ (MSMg01no327_n02.g1)
ACCAG445076AG445077
length780755
length of high quality
(start - end)
378 (43 - 420)337 (74 - 410)
definitionCHROMAT_FILE: MSMg01no327_n02.b1 PHD_FILE: MSMg01no327_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:47 2005CHROMAT_FILE: MSMg01no327_n02.g1 PHD_FILE: MSMg01no327_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGATCCGCGGAAT
TCCTGATCTTTCCACACTTTTATCATGAATGGGTGTTGGATTTTGTCAAA
TGCTTTCTCAGCATCTAACGAGCTGATCATGTAGTTTTTGTCTTTGAGTT
TGTTTATATACTGGATTACGTTGATGGATTTCCGTATATTGAACCATCCC
TGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGAT
GTGTTCTTGGATTTGGTTAGCAAGAACTTTATTGAGGATTTTTGCATCAA
TATTCATAAGGGATATTGGTCTGAAGTTCTCTATCTTTGTGGGGTCTTTT
TGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTTGGGTAG
AGTACCTTCTGTTTCTAGCCCGCGCAATAGCTTGTGAAGAACTGGGATTA
GATCTTCTTTGACGGTCTGATAGAACTCTGCACTAAAACCCTCTGGTCCT
GGGCTTTTCTTGGCTGTTAGACCATTACTGACTGCTTCCATCTCTTTGGG
CGAACTTCCGTCTTGCTACTTTTTTTATTCTTGATCATGACCCTGTTTCT
GCCTTCTGATCTCCTGTTTATCTAACTTTTTCCCTTTTCTCTTCTTGTTA
CTCCTATAACCTTTGCTTTTATTCTTTTTGGTTATGTTTATATGGTTGTT
GATTTTAAACATGTCTTTTCTATTTTACTCTCTTTGCCACTCCTCTATTC
TTTTCCTTTTATCATCTTCGTTTACCAAAT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGCAGGAATAAGTCCACCCTCCATT
TATCCATGTGCTGCCAACAGTAAAGATGTTAATTAAATCGGCTTTCAAAA
ATTGATCCCAAGGGCTGAGGAGATAACTCAGTAGATTAAACATTCGCCAC
AGAAATATGAAGACCAGAAATTTGATCTCGAGTATCTTTATAAAAAGCAA
GTTGTAGGGGCATTGTGAGAGCCTATAATTCCAACACCTGAAAAGCAGAA
ACTGGGCATCCAGTGCAAGCTACACAATTAGATTCGTGGTTCAGTGAGAA
GTTCTGCCTCCATATGAGGTAGAAGATGTTGGTGTAAGACACCCAGCATG
AACCTAAGGGCTCCAAAGCATTCACACACACACACACACACACACACACA
CACGCACACACACACACACACAGACACACACACACACACACACATGTAAA
CATGCATGCAAACATGGGAACACACAAAGCACGGTCAAAACTGATTTTAA
GTTGTTCAGGTTATGAGAAATTGCTTATCTGGGAAATGTTACTGTTTGTG
TGTTTTAGGAAAATTTTTCATTTCAGCTAACCTTTCTTCTAACATATAAT
ATATACCAGGATGTAATTGATGACATATTTGATAAAGATATTTTATTTAA
GTGATTTTCTATTCCTGATCAGAAAAACCAAAGTATTATGGAAGAGCCAA
CTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_n02.g1 MSMg01no327_n02.g1 CHROMAT_FILE:
MSMg01no327_n02.g1 PHD_FILE: MSMg01no327_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:48 2005
         (337 letters)



>mm_chr18_40950579_40951315
          Length = 737

 Score =  553 bits (286), Expect = e-162
 Identities = 330/352 (93%), Gaps = 16/352 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcaggaataagtccaccctccatttatccatgtgctgccaacagtaaagatgttaat 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 448 catgcaggaataagtccaccctccatttattcatgtgctgccaacagtaaagatgttaat 389

                                                                       
Query: 61  taaatcggctttcaaaaattgatcccaagggctgaggagataactcagtagattaaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taaatcggctttcaaaaattgatcccaagggctgaggagataactcagtagattaaacat 329

                                                                       
Query: 121 tcgccacagaaatatgaagaccagaaatttgatctcgagtatctttataaaaagcaagtt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 328 tcgccacagaaatatgaagaccagaaatttgatctcaagtatctttataaaaagcaagtt 269

                                                                       
Query: 181 gtaggggcattgtgagagcctataattccaacacctgaaaagcagaaactgggcatccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtaggggcattgtgagagcctataattccaacacctgaaaagcagaaactgggcatccag 209

                                                                       
Query: 241 tgcaagct----a-c-a--caattagattcgtg--------gttcagtgagaagttctgc 284
            |||||||    | | |  ||||||||||| ||        ||||||||| |||||||||
Sbjct: 208 cgcaagctggttagctatgcaattagattcatgagcaccaggttcagtgataagttctgc 149

                                                               
Query: 285 ctccatatgaggtagaagatgttggtgtaagacacccagcatgaacctaagg 336
           |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 148 ctccatatgaggtagaagatgttggtgtaagacacccaacatgaacctaagg 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)